BAC Information

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BAC

Clone NameMSMg01-393E23
Chromosome4 (Build37)
Map Location 144,683,456 - 144,683,820
singlet/doubletsinglet
Overlap geneVps13d
Upstream geneLOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393E23.T7 (MSMg01no393_e23.b1)MSMg01-393E23.TJ (MSMg01no393_e23.g1)
ACCAG494638AG494639
length767767
length of high quality
(start - end)		---385 (69 - 453)
definitionCHROMAT_FILE: MSMg01no393_e23.b1 PHD_FILE: MSMg01no393_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:12 2005CHROMAT_FILE: MSMg01no393_e23.g1 PHD_FILE: MSMg01no393_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACACTCCTATATTTCGAGATCCGCGGATTCTCCTTCTGTA
CGTGCCACGGCAGGCCNGGCTATCCATGAGTTTCTGCTGACTCTTGATAG
CTGCTTCTCNGNCTANTGCTTTTTTTGTGNNTAATGTNGTCTTTCTTTTT
TTTGTATGTGTTGNTGCTGTTGGGTGGGGGTTTGTGNNTNTCGTGTGTGG
GGGNATTGGGAAAAAACTATTTAAAAAAAGGTTGGCCCATTTGGNNNNNN
NNNNANNTTTAATATGTATGATCTGTGNACTTGGTNAATAAAATTTGCNN
TTGNNNNTCTATTNNTATAAAANANTTATTTTTTTTTTTTTTTTTNTTTN
TTTNTNTTTTTTNTNTTTTTTTTTTCTTTNNNNNNNCNCNNTTTTNCNTC
TTTTACTTCATTTTTTTTTTTCAACCNNNNCNCAAACAACCTACAACTTT
CATCCCTTTTTTTTCTTTATTTTTTATTTCTTTTTATTTTTTTTCTTTTT
TTTTCTTTTTTTTTTTTTCTTCTTTCCTTTCTTTCNTTTTTCTTTTTTTA
TTTTTTNTTTTTTTCTTTTTTNTTTTTTTCTTTTTCTTTTTTTTTTTTTT
NCTNTNTTTTTTNNTTNTCCNCCNCTCTTTCCTCTATTTANTTTTCCTTT
TNTNTTCTTANATTNTTTTTNTTTTCCACNCTTNATATTTTTTTNCATTC
TTCNATTNTTCTTCCCTTTCANTTTNCTCTTTCTTTNTNTTTTATTTTTT
GTTTTGTTTTTTTTTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCTTAAATACATATTTCTGTATGGTAGTTG
TACAAAGACTGTGTTAAATGTGAGTGAACATTTAGAACTTCACATAGCAA
CTGTAACCCAGCTTACAGTTGTAATGACGAACCACTTCCCTCAGTTATAT
TGAGTGTCTGAAGCCGGCATCCTGTTTTTTAAAGGTTGGACATGTTTGTA
ATCTCAGTACTGAGGAGATAGAGTCAGGAGTTCAAGGTTATCCTCAGCTA
CACAGTGAGGTGAAAGTCAGCCCTGGCTCCGTGACGAACCAAACATGAAA
CCAAACCATTGTGATGGAGCACAGCCTTGAGGGCTGTGATGATGAAAGTT
TGTTTCTAGCTCTCTCCATGTCAGGTACATGGGTCATCAAGGGTAGTTGA
GCCACACTGAGAGTTAATGAAGTCATTTGTTCCTGAGAAATATCTCTTAA
ACAGACAAGGCTTTCCTAAACTCTGTGCTTTGCACCAACAGGCCTGACCC
TCTGCAGAATTTTCTTTTTTCCCGCGNGGGGCCGGGCAGCCCCCACCCCC
TTGTTATTGGTTCAGGAAGGCTTTCTTCCTTTTTATTAGAAAGGAAGAAG
CCCCTCGGGGGAAAAATCTTAACCCTTTCAGGGCCACTTTCTTTTTTTTT
TCCTCCGGGAAACAAAAAAAGCCCCCCTATATTTTTTTTTTTCCCTGTGG
GGGGTTTTTTTATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_e23.g1 MSMg01no393_e23.g1 CHROMAT_FILE:
MSMg01no393_e23.g1 PHD_FILE: MSMg01no393_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:12 2005
         (385 letters)



>mm_chr4_144683456_144684240
          Length = 785

 Score =  706 bits (365), Expect = 0.0
 Identities = 365/365 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttaaatacatatttctgtatggtagttgtacaaagactgtgttaaatgtgagtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 attcttaaatacatatttctgtatggtagttgtacaaagactgtgttaaatgtgagtgaa 306

                                                                       
Query: 61  catttagaacttcacatagcaactgtaacccagcttacagttgtaatgacgaaccacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 catttagaacttcacatagcaactgtaacccagcttacagttgtaatgacgaaccacttc 246

                                                                       
Query: 121 cctcagttatattgagtgtctgaagccggcatcctgttttttaaaggttggacatgtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cctcagttatattgagtgtctgaagccggcatcctgttttttaaaggttggacatgtttg 186

                                                                       
Query: 181 taatctcagtactgaggagatagagtcaggagttcaaggttatcctcagctacacagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 taatctcagtactgaggagatagagtcaggagttcaaggttatcctcagctacacagtga 126

                                                                       
Query: 241 ggtgaaagtcagccctggctccgtgacgaaccaaacatgaaaccaaaccattgtgatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggtgaaagtcagccctggctccgtgacgaaccaaacatgaaaccaaaccattgtgatgga 66

                                                                       
Query: 301 gcacagccttgagggctgtgatgatgaaagtttgtttctagctctctccatgtcaggtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gcacagccttgagggctgtgatgatgaaagtttgtttctagctctctccatgtcaggtac 6

                
Query: 361 atggg 365
           |||||
Sbjct: 5   atggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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