BAC Information

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BAC

Clone NameMSMg01-393E24
Chromosome4 (Build37)
Map Location 11,299,278 - 11,299,663
singlet/doubletsinglet
Overlap geneRbm35a
Upstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4
Downstream geneLOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393E24.T7 (MSMg01no393_e24.b1)MSMg01-393E24.TJ (MSMg01no393_e24.g1)
ACCAG494640AG494641
length759784
length of high quality
(start - end)		400 (42 - 441)334 (69 - 402)
definitionCHROMAT_FILE: MSMg01no393_e24.b1 PHD_FILE: MSMg01no393_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:12 2005CHROMAT_FILE: MSMg01no393_e24.g1 PHD_FILE: MSMg01no393_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAGATAATTGTTATTTACCAGGCCCTCTAGCAACACTAGCAACACTAA
TTGGATATATAGGTGTGTGTGTGTATTGCATATAAATATATAAATTATAC
ATCACTTGTATATAAGTTGTAAGTATATTATACGTAATATATACGTATAC
ACATGTGAGATTGAGTGTGGCCTCACGAGTTTGCACTTTCTGCCTTCCAT
GTAGCTAAGTTTCAGATGTGAGCCGCCACTTGTTTTGTTGGCTTGTGCCT
ACCTATATCTTAACTGCTTGTATGTTGCATCTGACTCATCTGGTGGGTTT
GAAATTCCTTTACTTGGCCCTTCATTATGCTAATACCTCCAGGAAGTTGG
ATTTGTTACATAGGGATTTTTTTTCCCCTTGAAAAGTGTANATTAAATCA
AGCTAAGAATTTGAATACTTTCCCCAGCATATTTCTGGTATAAAAGAGTT
GGCTGCTATGGCTTGCTTTTTTTATTTTCTTTTTTTTCCTCCCCCGAAAA
CAGTTTCCCTTTTTTGCCCCGAATGTCCACAACACCAACCTGTAAAAAAA
TTGTCTTTTACTTTGCCCTTTGAAGGTGGGGGAAAATAGGTGCCCCCCTC
GCTTGCTGGTGACCTTTCACTTTTTTTGGTACACTATCATTTCCTTTCCC
CCCCCCGTTTCTTATACTCTCATATTTTCACTATTTCCCTTAACCCTCCC
TTTTATCCA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGGCGGTAACCC
GTAAGTATAGCTTTACGAGGTAAGCCTGGCCTTGAACTTTCTAAGGAAAT
TCAGGACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTATAAGGTATGT
TTGGCCTTGAACTTTCTCTAGTGTTAGAAGCCCTTTTGTTCCTTTTCACA
TGTTATCAAGTGGTTAAGGCAGGGCGGATTCTGGATGAAGTTCAGGACAA
TCTATCAGAAGTAAAGCGGGGAGAGAGAATAGGAGCAAAGAGAAAATATG
GTACACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCTGAGGAA
AAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAGAA
GGAACATGAACATATATTGATCCTTTATAGAACCCTGTTCTTAATTAGTC
TTGAATCCAATTGTTATGGCTTTTATTGGCCCGGAAGGTTTTCTCCCTCA
TCTGTGAATCTCTCTGTCTCTACTGTGTCCAGCCTGGCCTTTTGTCGTCT
TTATGGTGTTATAGTTTCCCCTTTGGGGATACGACCCCCTGCTCTAATTG
ATTTATCTATCTGTTCCTCCTCTTTTTTCTTCCTTTCCCTCTTCCCCTCT
CCCTTTTTCTTATTTTTCTTCAGCTTTTTTCTCGGGGCTCCTCTCCCCTT
TTTTTTGTTTTTTTTTCTCTGTGTCTTTATTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_e24.b1 MSMg01no393_e24.b1 CHROMAT_FILE:
MSMg01no393_e24.b1 PHD_FILE: MSMg01no393_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:12 2005
         (400 letters)



>mm_chr4_11298912_11299713
          Length = 802

 Score =  677 bits (350), Expect = 0.0
 Identities = 379/394 (96%), Gaps = 10/394 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagataattgttatttaccaggccctctagcaacactagcaacactaattgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 752 gaattctcagataattgttatttaccaggccctctagcaacactagcaaaactaattgga 693

                                                                       
Query: 65  tatataggtgtgtgtgtgtattgcatataaatatataaattatacatcacttgtatataa 124
           ||||||||||||||||||||||||        ||||||||||||||||||||||||||||
Sbjct: 692 tatataggtgtgtgtgtgtattgc--------atataaattatacatcacttgtatataa 641

                                                                       
Query: 125 gttgtaagtatattatacgtaatatatacgtatacacatgtgagattgagtgtggcctca 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 640 gttgtaagtatattatacgtaatatatacgtatacacacgtgagattgagtgtggcctca 581

                                                                       
Query: 185 cgagtttgcactttctgccttccatgtagctaagtttcagatgtgagccgc--cacttgt 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 580 cgagtttgcactttctgccttccatgtagctaagtttcagatgtgagccgccacacttgt 521

                                                                       
Query: 243 tttgttggcttgtgcctacctatatcttaactgcttgtatgttgcatctgactcatctgg 302
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 520 tttgttggcttgtgcctacctatatcttaactgcttgtaggttgcgtctgactcatctgg 461

                                                                       
Query: 303 tgggtttgaaattcctttacttggcccttcattatgctaatacctccaggaagttggatt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgggtttgaaattcctttacttggcccttcattatgctaatacctccaggaagttggatt 401

                                             
Query: 363 tgttacatagggattttttttccccttgaaaagt 396
           |||||||||||||| |||||||||||||||||||
Sbjct: 400 tgttacatagggatcttttttccccttgaaaagt 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 802
Length adjustment: 9
Effective length of query: 391
Effective length of database: 793
Effective search space:   310063
Effective search space used:   310063
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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