BAC Information

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BAC

Clone NameMSMg01-393H06
Chromosome4 (Build37)
Map Location 21,614,552 - 21,614,909
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik, Prdm13
Downstream geneCcnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393H06.T7 (MSMg01no393_h06.b1)MSMg01-393H06.TJ (MSMg01no393_h06.g1)
ACCAG494747AG494748
length776792
length of high quality
(start - end)		501 (33 - 533)359 (64 - 422)
definitionCHROMAT_FILE: MSMg01no393_h06.b1 PHD_FILE: MSMg01no393_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:23 2005CHROMAT_FILE: MSMg01no393_h06.g1 PHD_FILE: MSMg01no393_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACAATA
AAAAAATAAATAAATTCTGCTCAATCCCTGTGGTGACGTGACTGAGAGCG
GCCCCCGTAGGCTCACAGAACAGATTTGAACACTTGCTCTCCAGGTGGTG
GGACTGTCTGGGAAGGACCAGAAGGAACGACCTTGATGCCCGAGTGTCAC
GGACGGACGGGGTGCTTCTCCTGAGGTTTCAATAGCCCCACACGATTCCC
AGCTAACTACTTCTGCCTTGTGCTTATGAACAAGATCTGCGGGATTAGCT
ACTGCTCCAGCACCACATGCCTGCCTGCCGCCATGCTTCTCACCATCAGA
GACTCTAATCCTCTCCTATAAGGCACCTTGGTCATGGGGTCTTGTGATAG
CAATAGAAAAATAATAAGACAATTTCCTGCTGCCTCCTAAGTGTCTATTC
TTTTAATTATTTGAAACATTTCCATTAAAAAAAAAATTGGAGAGGGCAGG
AAAGATGGCTCAGCAGTCAAAGAGCACTGACTGTTCTTCCAGAGGTCCTG
AATTCAATTCCCAGAAACCACATGGTGGCTTACAACCATCCCTCTCCTGG
TGTGTCTGGAGATAGGTACAAGTGAACTCATAANAGTTAAATAAAGCTTT
TTAAAACATGTGGGAAAAAAATGAATTAATGTTCTCCAGCTCCTATAAAC
CTAAACAATTTTATACTTCCTTTTTTGTATTGGGGGGATGGGGGGGTGCG
CCCTCTTTGTATATTTAAAAAAAAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGTTTACATCAATGGGAAAGCCAGGCCAGGTCAAAG
GTCTCAGGTCTACGCAAATGAAGACAAGGCCACGCAGGGACACAAAGAAG
ACAGACTCGGTGTCCACTCCCAGGTCTATGTAGATACACCTGCGTGAGAC
AGGAGAGAACCTCTTGGTGGGACTTGAATAGCCATGCCTTTTGTGACTAC
ACAGAGCCTTGCCGGAAACTAGTTTCTAAGATGGCAACCTCTACGTTTCA
CGCTCAACCTTCCAATTGCTTCTCTGACGGTAAAGAAGGCTATCCTCCAG
AGATAGAAGAGAGCCTTTGATCTCGGGGGGCCTATGAATGGCAAAACCGG
GGAGGGGGGAGGGAAGTGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNTNNNNNNNNNNNNNNNNNN
TGNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTNT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTGTTTTTTTTTT
TNTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTNTT
GGTTTTTTTTNTTGTTTTCCTTTTTATTTTTGTGTTTTGGNTGTTTGGTT
TNTTGTTTNGTGGTTGTTTTGTTNCTGGGTGTTTTGGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_h06.g1 MSMg01no393_h06.g1 CHROMAT_FILE:
MSMg01no393_h06.g1 PHD_FILE: MSMg01no393_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:23 2005
         (359 letters)



>mm_chr4_21614352_21615109
          Length = 758

 Score =  671 bits (347), Expect = 0.0
 Identities = 356/359 (99%), Gaps = 1/359 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtttacatcaatgggaaagccaggccaggtcaaaggtctcaggtctacgcaaatgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtttacatcaatgggaaagccaggccaggtcaaaggtctcaggtctacgcaaatgaag 260

                                                                       
Query: 61  acaaggccacgcagggacacaaagaagacagactcggtgtccactcccaggtctatgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaggccacgcagggacacaaagaagacagactcggtgtccactcccaggtctatgtag 320

                                                                       
Query: 121 atacacctgcgtgagacaggagagaacctcttggtgggacttgaatagccatgccttttg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacacctgcgtgagacaggagagaacctcttggtgggacttgaatagccatgccttttg 380

                                                                       
Query: 181 tgactacacagagccttgccggaaactagtttctaagatggcaacctctacgtttcacgc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tgactacacagagccttgccggaaactagtttctaagatggcaacctctaagtttcacgc 440

                                                                       
Query: 241 tcaaccttccaattgcttctctgacggtaaagaaggctatcctccagagatagaagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaccttccaattgcttctctgacggtaaagaaggctatcctccagagatagaagagag 500

                                                                      
Query: 301 cctttgatctcggggggcctatgaatggcaaaaccggggaggggggagggaagtggagg 359
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttgatctcggggg-cctatgaatggcaaaaccggggaggggggagggaagtggagg 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 758
Length adjustment: 9
Effective length of query: 350
Effective length of database: 749
Effective search space:   262150
Effective search space used:   262150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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