BAC Information

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BAC

Clone NameMSMg01-393L11
Chromosome4 (Build37)
Map Location 71,184,043 - 71,184,535
singlet/doubletsinglet
Overlap genenone
Upstream geneMegf9, LOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393L11.T7 (MSMg01no393_l11.b1)MSMg01-393L11.TJ (MSMg01no393_l11.g1)
ACCAG494945AG494946
length743749
length of high quality
(start - end)		493 (68 - 560)448 (70 - 517)
definitionCHROMAT_FILE: MSMg01no393_l11.b1 PHD_FILE: MSMg01no393_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:46 2005CHROMAT_FILE: MSMg01no393_l11.g1 PHD_FILE: MSMg01no393_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCATGTCAGCATACGANTCACTATATCCAGAGGATCCGCGGAATTCT
TAGGTCTTCCCAATGAGGCAATGGAAACAGAATTAAGGCATTTACTGAGG
TTGCAAACCAAGGAATGTAGGTGGAACCTATATTGGAAAAGACAAGCAAG
ACAATTGGCTGGATCTACTAGAAGGAACACCATGACTCTTCCTTTGAGAC
CCATTCTGAACTTGTAATCCAGACTTTCAAGGAAATACATTCAATATTGT
TTCAAAGCACCAAATTTGTGGTGCTTTGTACAGTCATCTCAGAAATTAGT
GCAAACAGACTTTGCTCTTAGCCTTATTTGACATGGAAAGTGTGTCTCCT
GAAAGACCTACCTCATGGAACACAGCTGTAAAAGCACTGTATAAACAATT
TTCACAAAATCTGGATAGGTGTGTATAAATGCTAGTGAATTTGCACAGCT
CATCAAGAGGAGACAAAAGTTCTGGTAAATACAATAAGCAGCAGACATCA
ATAAGTAAAGTTTGGTAAAATAGCTTGTTTTGTCACACCATAGTGAGTCA
CAAAGTTTTTCTGGCTTAAAGAGCTAAAGTCCCTATCTCTCTCTAAAAAG
TAGCCCTGGGGACCTGTCTCTCTAAATATAGGCACTCTTCTATGCTACAG
GNCAAACCGTTTGAAGCAGGAGGGAGCAGAATCCTCCCTTTTGCCTCCAA
AACCCAACTGGGATTCTTAAAACCAAAAATGTTTTGAGGGGAG

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGG
GTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTT
CGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGG
ATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTAT
TGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTC
ATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTT
TGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCA
CTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAAACTATTAATAAC
TGCTTCTATTTCTTTAAGTGATATGGGACTGTTTAAATGGCTCACTTGAT
CCTGAACCACCTTTGGTACCTGTTATCTGTCCCCAAATTTGTCCTTTTCC
TCCCTGTTTTCTCCTTTTGTTTAATATACCCTCTTTTTTCAAAAATCTGA
AGCCGCTTTTCATTCCCCCACTTACCCGTGCTTTATTCTACTCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_l11.b1 MSMg01no393_l11.b1 CHROMAT_FILE:
MSMg01no393_l11.b1 PHD_FILE: MSMg01no393_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:46 2005
         (493 letters)



>mm_chr4_71183843_71184735
          Length = 893

 Score =  938 bits (485), Expect = 0.0
 Identities = 491/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaatggaaacagaattaaggcatttactgaggttgcaaaccaaggaatgtaggtggaac 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaatagaaacagaattaaggcatttactgaggttgcaaaccaaggaatgtaggtggaac 260

                                                                       
Query: 61  ctatattggaaaagacaagcaagacaattggctggatctactagaaggaacaccatgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctatattggaaaagacaagcaagacaattggctggatctactagaaggaacacgatgact 320

                                                                       
Query: 121 cttcctttgagacccattctgaacttgtaatccagactttcaaggaaatacattcaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcctttgagacccattctgaacttgtaatccagactttcaaggaaatacattcaatat 380

                                                                       
Query: 181 tgtttcaaagcaccaaatttgtggtgctttgtacagtcatctcagaaattagtgcaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtttcaaagcaccaaatttgtggtgctttgtacagtcatctcagaaattagtgcaaaca 440

                                                                       
Query: 241 gactttgctcttagccttatttgacatggaaagtgtgtctcctgaaagacctacctcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactttgctcttagccttatttgacatggaaagtgtgtctcctgaaagacctacctcatg 500

                                                                       
Query: 301 gaacacagctgtaaaagcactgtataaacaattttcacaaaatctggataggtgtgtata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacacagctgtaaaagcactgtataaacaattttcacaaaatctggataggtgtgtata 560

                                                                       
Query: 361 aatgctagtgaatttgcacagctcatcaagaggagacaaaagttctggtaaatacaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgctagtgaatttgcacagctcatcaagaggagacaaaagttctggtaaatacaataa 620

                                                                       
Query: 421 gcagcagacatcaataagtaaagtttggtaaaatagcttgttttgtcacaccatagtgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagcagacatcaataagtaaagtttggtaaaatagcttgttttgtcacaccatagtgag 680

                        
Query: 481 tcacaaagttttt 493
           |||||||||||||
Sbjct: 681 tcacaaagttttt 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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