BAC Information

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BAC

Clone NameMSMg01-393O03
Chromosome4 (Build37)
Map Location 46,941,632 - 46,941,953
singlet/doubletsinglet
Overlap geneGabbr2
Upstream geneTdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
Downstream geneAnks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393O03.T7 (MSMg01no393_o03.b1)MSMg01-393O03.TJ (MSMg01no393_o03.g1)
ACCAG495071AG495072
length777780
length of high quality
(start - end)
430 (36 - 465)322 (65 - 386)
definitionCHROMAT_FILE: MSMg01no393_o03.b1 PHD_FILE: MSMg01no393_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:02 2005CHROMAT_FILE: MSMg01no393_o03.g1 PHD_FILE: MSMg01no393_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCCGCGGAATTCTCACCT
CCTTCACCCCTACATCTGCCTGGACACTGCCATGTTTCTGCCTTGATGAA
AGTGGACTGAACCTCTGAACCCGTAAGCCAGCCCCAATTAAATGCTGTCC
TGTGTAAGACAGGACATGGTGGTCTGTTCACAGCAGTCTGGGTCATGGTG
TCTGTTCACAGCAGTAAACCATAACTAAGACACAGCCATCTAAAGTGACT
GCCAGTCAGTGCTTCTTGCATTCCTAAATGTAAGAAACTGACGCAGGGCC
AACGATATGGCTCAGCTGTTAAAGGCACTTGCCACAAAGTCTGACAACAT
GAGTTTGATTCCTGGAACCTACGTGGTAGTAAGAGAGAAGCAATTCCCCT
AGAGTTGTCCTCTGACCACAACACATGTGCCACAGCATGCATAAGCCTAA
GCATAAACACACACACACTCACACACACACACTCACACACACACACCCGA
ATAAATAAACACAAAAGAAAAATACCTAACAGCTCTTACCCTAAGGTGTT
TTCTCTGTGCGGTTGTGATATGCCTTTGCTAGAAAATACCTGTATTTAAT
AGCTGGTCATACTTGAATTTCCAGTGCTCTTTTTTATTTAAAAAATGTTG
AATTACTCTTCTTTTACTATATATTTACTTATCTTCCCTACATACCGTTC
GTTCCTTCCTTTATAATCTCGCTACCTTTTGCTTAATATATTCTCTTCAT
TTAGTCCCTTTCTAATGTTTTGTTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAATCCAAGGAGCTCTAGGTGTAACAAAATGGTTGT
TGGTTTCTGTCATTAAGTTTGGAATGGCTTGTTACATACAGTCAGTGCCT
GGAACACTCAGCAGGTGCACTCATCCCTTCTAAACTCCTTGGGCCGCCTT
TGAGTAAGTCAATGCAATGGGTACAAAGGGAGCCTCGAGAGTGCCTTCCT
ATTTATATCTGTGCCAGCACGTGGCTATAAACAGCAGTGTGTCTGTGGGC
GCAGGAAGGGCCCAGCTTGCTCTGCTTTCCTACCCAGGCTGTCAGTACCC
CAGTCACCGGCAGCTTTGAGCTACCCATGCAAAGCAAACTGGTTTGAGTT
ATCTAACANNACCCACCACGNNTCTAGGAAGNCAGTATGAGCTGACTTCA
GAGCATCACAGAAAACCACACTCTAGGTAAGAAAATCGCTTATAAAGATG
TATAGCTCTGGTTGCCAGGCAGTGGGGACTATTTTAGTCCCTTACTTCCT
TGGATCATCCCTGTAAAATCATTCATTCCAACATTTTGCACTACCCCCGA
ATCATAACTCTATCTACTTACCTTGCTTATTATTTTAACTCTCCTGATCT
CTTCAAACACCGATTACTATCGTGTTTAATGACCCTTTTTTTGCATTTCT
GCTCTGTCTAACTATTCGATCACTCTTTAAGTATAATTAATATATCCTAT
GTTGCTGCGTTTTATTTTCTTTTGTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_o03.g1 MSMg01no393_o03.g1 CHROMAT_FILE:
MSMg01no393_o03.g1 PHD_FILE: MSMg01no393_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:02 2005
         (322 letters)



>mm_chr4_46941432_46942153
          Length = 722

 Score =  576 bits (298), Expect = e-169
 Identities = 316/322 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatccaaggagctctaggtgtaacaaaatggttgttggtttctgtcattaagtttggaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatccaaggagctctaggtataacaaaatggttgttggtttctgtcattaagtttggaa 260

                                                                       
Query: 61  tggcttgttacatacagtcagtgcctggaacactcagcaggtgcactcatcccttctaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tggcttgttacatacagtcagtgcctggaacactcagcaggtgcactcatcccttctaca 320

                                                                       
Query: 121 ctccttgggccgcctttgagtaagtcaatgcaatgggtacaaagggagcctcgagagtgc 180
           |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccttgggccttctttgagcaagtcaatgcaatgggtacaaagggagcctcgagagtgc 380

                                                                       
Query: 181 cttcctatttatatctgtgccagcacgtggctataaacagcagtgtgtctgtgggcgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcctatttatatctgtgccagcacgtggctataaacagcagtgtgtctgtgggcgcag 440

                                                                       
Query: 241 gaagggcccagcttgctctgctttcctacccaggctgtcagtaccccagtcaccggcagc 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagggcccagcttgctctgctctcctacccaggctgtcagtaccccagtcaccggcagc 500

                                 
Query: 301 tttgagctacccatgcaaagca 322
           ||||||||||||||||||||||
Sbjct: 501 tttgagctacccatgcaaagca 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)