BAC Information

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BAC

Clone NameMSMg01-394A12
Chromosome4 (Build37)
Map Location 7,660,589 - 7,660,835
singlet/doubletsinglet
Overlap genenone
Upstream geneTox, LOC100039421, LOC666700
Downstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394A12.T7 (MSMg01no394_a12.b1)MSMg01-394A12.TJ (MSMg01no394_a12.g1)
ACCAG495184AG495185
length805786
length of high quality
(start - end)
354 (49 - 402)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no394_a12.b1 PHD_FILE: MSMg01no394_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:15 2005CHROMAT_FILE: MSMg01no394_a12.g1 PHD_FILE: MSMg01no394_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTCTATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGTTATTTTCCTTCTGGAATATTTAATCCTTGCCACATTCT
AGTTTAATCTCAAAGGCAGTCCAAATGTGAGGAGGGTCTGATATCTCAAA
GTGTACTCTTCAATTTTCAATACCTTTATTTTGGTCTCATTATTTTATAT
AGGTATAGTCTATTTCAGGAGACATGATGTTAGACATATACAAAGAATTG
TCTTTGAACAATAACCATATTCATGCTATATTCATAGAGGAAGATATTCA
GTATTTTTCACAGAAAATATAAGACTTTTAATAAAAAAAACTAACATAGG
TTCAATTCTTGACCTCTCTATTTACAACATTCCTGTTTTTGCTTCTTAAC
TCATGCAATGCTAGAAAACATTTACCATTATATTTAGTACCCTAAATATT
TTTCATGTACAGAACACCTCATGTTCCACATGAGTGTTACTCCGCATCAA
TGCCTTTTATAAATATGCTCCAGTACTTCTCTATTTTCGCTTATTTCTCC
GTTTCCTATATCTTCTTTTTTTTCCCTTTCCCCTTCTTCTTTTTCTCCCC
TTTCCCCTTCTTCTCCTTTTCCTTTATCTCTCCTCCTTCTTTCCTTCTCC
TCCCTTCTTCTCTTCTCTTCTTCTTCCCTTTTCTCCTTTCCCCCTCTCCC
CCTCTTCCTCCCCTCCCTCTCTTCTCCCTTTTCCTCCCGCTATCCTACTC
TTCCCTCGCCCATTCCTTACCTCTTCCCTTTTTCTTCTCCTCCACTATCC
TTCGC
TTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGAACATAACACCTAACGAGTG
TGATTTTGTGTACTGTAGCGTGCCTATCAAAGGCTTTACTGCTTACAATC
ACATACAAGAGAATACACAAATATGTGTCTTTTATGGTCTGGTCTCACTT
GGGATGAATTTATTCGAATCTTCATCCATTCACCTACAAATTTCATAATT
TTGTTTGTTTCCAATTGCCAAATATCATTCCATTGTGTAAATGCACCACA
TTTTTATTACCCATTTTTCTGGCGAGTGATTATCTAGGCTGCCCTCATTT
GTCGACTATTATGAATATTGTTGCCTTGATTATGAATGACTAAGTGCCTC
TGCACCCCGATCGCTAGTTTTCCTTTTCCATCTCCTCTTTTTTTCCCCTT
CTTATTTCTTTTCTTTTCCATTTTCCCCTTTCACTTTTCCCTTCTTTTCC
ATCCTCCCTTTTTCCCTTTTCCCATACATTTCCTACCTCTTCTTTTATAT
TTCCTCCCTCCTATCCTTTCTCTCTTTCCCCCTTCCTCCCTCCTATATTC
TCTCACTACTACTTTCCCTTCCTCTCCCTCCTTCTTCTTTCATTTTCCTC
ATCTACTCTCAACTCATTCCCCCCCTCTTTTTTCTCCTCCTTTCCCCTTC
TCCTCTTTTTCTATCTTTCCCTTCACACCTTCTATTCCTTAAACCTCTCC
CCTCTCTTCCATTTATCCCTTATCTTTCCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_a12.b1 MSMg01no394_a12.b1 CHROMAT_FILE:
MSMg01no394_a12.b1 PHD_FILE: MSMg01no394_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:15 2005
         (354 letters)



>mm_chr4_7660282_7661035
          Length = 754

 Score =  462 bits (239), Expect = e-134
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 108 ctcttcaattttcaatacctttattttggtctcattattttatataggtatagtctattt 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctcttcaattttcaatacctttattttggtctcattattttatataggtatagtctattt 495

                                                                       
Query: 168 caggagacatgatgttagacatatacaaagaattgtctttgaacaataaccatattcatg 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 caggagacatgatgttagacatatacaaagaattgtctttgaacaataaccatattcatg 435

                                                                       
Query: 228 ctatattcatagaggaagatattcagtatttttcacagaaaatataagacttttaataaa 287
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctatattcatacaggaagatattcagtatttttcacagaaaatataagacttttaataaa 375

                                                                       
Query: 288 aaaaactaacataggttcaattcttgacctctctatttacaacattcctgtttttgcttc 347
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaaactaatataggttcaattcttgacctctctatttacaacattcctgtttttgcttc 315

                  
Query: 348 ttaactc 354
           |||||||
Sbjct: 314 ttaactc 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)