BAC Information

Click to search

BAC

Clone NameMSMg01-394B03
Chromosome4 (Build37)
Map Location 10,825,059 - 10,825,606
singlet/doubletsinglet
Overlap gene2610301B20Rik
Upstream gene4930448K20Rik, LOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589
Downstream geneLOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394B03.T7 (MSMg01no394_b03.b1)MSMg01-394B03.TJ (MSMg01no394_b03.g1)
ACCAG495214AG495215
length753754
length of high quality
(start - end)
567 (40 - 606)459 (84 - 542)
definitionCHROMAT_FILE: MSMg01no394_b03.b1 PHD_FILE: MSMg01no394_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:19 2005CHROMAT_FILE: MSMg01no394_b03.g1 PHD_FILE: MSMg01no394_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCCCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCCACAAACTCACAACAAATTGATCGAGAAGAAAGGAGCAC
GGGCATATGCCTGCCAGTGTAGCTGGAGAACTGTTGAAGAACTCACTGAC
CTGCAGACAGATCATCAGCTTCGCTGGGTGTGTGGTAAACACTGAGAGTG
CAGACAGCGGCACCTGTGAGAACAAGTTCCGGGTACCAACTTGGGTACCA
GTGCACAGCAGTATTGTGCGCGCTGGGAAAAGGCAACAAATGCTGTGTAA
CCACACATGTCTGAAGACCAAATGGACTGGAAAAGACATGCGTACTGTGA
CACCTTGGCATTCTTCCTTTCGACGTGGACATTTTACTTAGGTTAAAATA
TCTGCGTTTGCCAGCCTATCACCTTTTAGGGACTGAAATAGTGACATCCC
GTGCAGATTTACAGCTTTTTTATAGCAACTGCCATACTGACTACTAATGC
ACTCTAAAATGTTCCTCATGTGTCATCGTTGTTAAAGAATACCCACTGGC
ATGGCAGAGAGGTCATTGTATATGAGCGTTCATGGCTCTTCCTATTCTGA
TCTATCATTGGCTGAGACTATTAAGTTGAACATGACCGACAAGCAGATGA
CCATTGGGTTACCTGAGGAGTTGGCAAGAATACCGGCAACTTGTTAACCC
TGCCCTTTTATGTACCTCCACCTTTGCTCCCCCACCCCCTTTTCCCTATT
ACG
NTTTTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGCTCTTTCATGGT
ATTCCCTTGTTTGGGTGTGATTTGCTACTGACCTTAGTAAACACCTTGCA
GACCAGCTCTGAGCTACTGGCTCCGTCTTTTGTAATGCTTAATTAGTTAC
TGAATAGGTTAACTTCCTTACTGCATTCTTACAGAATTCTAAACTCACAG
GCTTCTGGGACCTTGGAACAATGGGGAGACTTAACTATAAAAGAATTTTT
CCATACACCAGATTAAGGGAATAGGGTATGAGTATATGGGTAAATGGGAA
CGCCAAAGCTCCAGGAGGTGAGTTTCCTTGAAACTCTTTTCCTCGTTGAG
TGCTTTCAGACTTTCAGCCTGTCAAGCAGACTTGACCAGAGGGCGTGGCA
GTCACTCAGTCACGGTCCATTTGAACATTTTCATACAGCACAAAGATTTT
CGCGTTGTTTTAAGACAGGGTATCACTATATATCCCTGGCTGCGCTAGAA
CTTTCCACGTAGACCAAGCTGATCTTCAGAGATCCACCTGCCTCTGCTTC
CCACTTCTGAGTATAGAGGTGTGCATTAACACACTCAGTTGCTACTGTTT
TTACCCTTGTCTGATGGTCAGTAGAATAAGCCCTGCTAAAGTTCCTATTT
TCTTTCCCATCTCCCGTAATACCCTCCTCCCTTCACTCCTCTTTTTTTCC
CCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_b03.b1 MSMg01no394_b03.b1 CHROMAT_FILE:
MSMg01no394_b03.b1 PHD_FILE: MSMg01no394_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:19 2005
         (567 letters)



>mm_chr4_10824843_10825810
          Length = 968

 Score = 1006 bits (520), Expect = 0.0
 Identities = 541/548 (98%), Gaps = 1/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattccacaaactcacaacaaa-ttgatcgagaagaaaggagcacgggcatatgcctgc 75
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattccacaaactcaaaacaaaattgatcgagaagaaaggagcacgggcatatgcctgc 276

                                                                       
Query: 76  cagtgtagctggagaactgttgaagaactcactgacctgcagacagatcatcagcttcgc 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cagtgtagctggagaactgttgaagaactcactgacctgcagacagatcatcagcttcgc 336

                                                                       
Query: 136 tgggtgtgtggtaaacactgagagtgcagacagcggcacctgtgagaacaagttccgggt 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgggtgtgtggtaaacactgagagtgcagacagcggcacctgtgagaacaagttccgggt 396

                                                                       
Query: 196 accaacttgggtaccagtgcacagcagtattgtgcgcgctgggaaaaggcaacaaatgct 255
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 accagcttgggtaccagtgcacagcagtattgtgcgcgctgggaaaaggcaacaaatgct 456

                                                                       
Query: 256 gtgtaaccacacatgtctgaagaccaaatggactggaaaagacatgcgtactgtgacacc 315
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 457 gtgtaaccacacatgtctgaagaccaaatggactggaaaaggcatgcgtactgtgacacc 516

                                                                       
Query: 316 ttggcattcttcctttcgacgtggacattttacttaggttaaaatatctgcgtttgccag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttggcattcttcctttcgacgtggacattttacttaggttaaaatatctgcgtttgccag 576

                                                                       
Query: 376 cctatcaccttttagggactgaaatagtgacatcccgtgcagatttacagcttttttata 435
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catatcaccttttagggactgaaatagtgacatcccgtgcagatttacagcttttttata 636

                                                                       
Query: 436 gcaactgccatactgactactaatgcactctaaaatgttcctcatgtgtcatcgttgtta 495
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gcaactgccatactgactgctaatgcactctaaaatgttcctcatgtgtcatcgttgtta 696

                                                                       
Query: 496 aagaatacccactggcatggcagagaggtcattgtatatgagcgttcatggctcttccta 555
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 697 aagaatacccactggcatggcagagaggtcattgtatatgagtgttcatggctcttccta 756

                   
Query: 556 ttctgatc 563
           ||||||||
Sbjct: 757 ttctgatc 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space:   533606
Effective search space used:   533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)