BAC Information

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BAC

Clone NameMSMg01-394B23
Chromosome4 (Build37)
Map Location 114,088,358 - 114,088,775
singlet/doubletsinglet
Overlap geneLOC666048
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394B23.T7 (MSMg01no394_b23.b1)MSMg01-394B23.TJ (MSMg01no394_b23.g1)
ACCAG495253AG495254
length780775
length of high quality
(start - end)		460 (49 - 508)418 (80 - 497)
definitionCHROMAT_FILE: MSMg01no394_b23.b1 PHD_FILE: MSMg01no394_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:23 2005CHROMAT_FILE: MSMg01no394_b23.g1 PHD_FILE: MSMg01no394_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTCTTCATGTCCTCTACCATCATCATGAGATATGCTTTTAA
ATCCAGGTCTATCTTTTCAGGTGTGTTAGGGTGTCCTGGACTGGGCGAAG
TGGGCGTTCTGGGTTCTGATGATGGTGAGTTGTCCTGGTTTCTGTTAGTA
GGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGC
TATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTGCCCTC
AATCAGCAGGCATGGGAGACAAGCTCTCTCCTCTGAGTTTCAGTGGTCAG
AGCAGTCTCTGCAGGCAAGCTCTCCTCTTTCAGGGAAGGTGTACAGTTAT
CTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATC
TTTCCCAGAAGCTGTGTTCCTTTGGCCAGGAAGGTGGCCTTTTGTCTGGA
GTCGAATATGTCGCCGCCTCAGAAGCTCTGTGGCTCTCGNCAGGAAGGTT
GTCGGCTGTCTGTAGCCAAAGATGGCGGCGGCTCATAGCTCTGTGGTTCT
CGCCAGAAAGGGGGCCGGTTGTCTGGGACCCAAAATGCGCCCCCTCCTAA
ATTTGGGACTCTCTCCCGGCCCAAAAACGGTTGGCTTTGTTTTCCCTCGG
GTCCCCCTGTTAATTGCCCTCCCGGAATCCCGGAACCAAAAAGATTCTGC
CGGGCGCCGTGGTGACTTTTTTTCTCGGAA

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGAAATGGCCCCTTCCAA
CTCCAAGATTTTAGAAGTCTGTGTTGATGAGCTGAAAATGCTTCAAAGCT
CCGAGGCTAGGATTTCATGACGTGAAGATTCTTCCGGTCCAAAAATGTCT
CAGAGCTGAAGGGTCTAAGATTTCACCATTCTTTGCTTTTCTGAGCCTCA
GAGTTTGGGCTCCTGGGTAGAGAAGTCCTGAGCCTGGAAGTTTTACTGTG
AGTTTATGATTCAAGCTTCATCACCTTCAGCTTTGGGAACTCATTGTCCT
TTGATGGAGGTGCCTAAGCTGTCCTGTGTTTCTGCTTCTGCATTTGCCAC
CTGATTCTCAGGCCCCCATTCAGATAAGACATAGATATCAAGGTTTTCGT
CAATCAGGTCACAGAGATGAGACATATGGAGCCTTCAGTGTCATTGGGAC
CTTTTTGCAATTGCGACTTGGACCCAGAACAATCCATGTATACCTATGAA
GCCGTGTTACCAAAGGACCAGCCTCCCCAGGGATTGTCCCCAAAAAGATT
CCTGGGTTGGGAGTGGAAGCCCATGGGAAATGTCAGCTTAAATATAAAAA
ACCCTGCTTGGCGCCCTGATCTTAAAATTAAAGGGGCCCCCCCAAAGAGG
GTGGGTGGATCTCCCCCCCCCCAAAGAGGTCCAAAAAAAAAAGGGGTCCC
TTGGTCCCCTCGTATTTTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_b23.g1 MSMg01no394_b23.g1 CHROMAT_FILE:
MSMg01no394_b23.g1 PHD_FILE: MSMg01no394_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:23 2005
         (418 letters)



>mm_chr4_114088158_114088975
          Length = 818

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagaaatggccccttccaactccaagattttagaagtctgtgttgatgagctgaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttgagaaatggccccttccaactccaagattttagaagtctgtgttgatgagctgaaaat 559

                                                                       
Query: 61  gcttcaaagctccgaggctaggatttcatgacgtgaagattcttccggtccaaaaatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcttcaaagctccgaggctaggatttcatgacgtgaagattcttccggtccaaaaatgtc 499

                                                                       
Query: 121 tcagagctgaagggtctaagatttcaccattctttgcttttctgagcctcagagtttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcagagctgaagggtctaagatttcaccattctttgcttttctgagcctcagagtttggg 439

                                                                       
Query: 181 ctcctgggtagagaagtcctgagcctggaagttttactgtgagtttatgattcaagcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctcctgggtagagaagtcctgagcctggaagttttactgtgagtttatgattcaagcttc 379

                                                                       
Query: 241 atcaccttcagctttgggaactcattgtcctttgatggaggtgcctaagctgtcctgtgt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 atcaccttcagctttgggaactcactgtcctttgatggaggtgcctaagctgtcctgtgt 319

                                                                       
Query: 301 ttctgcttctgcatttgccacctgattctcaggcccccattcagataagacatagatatc 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttctgcttctgcatctgccacctgattctcaggcccccattcagataagacatagatatc 259

                                                                     
Query: 361 aaggttttcgtcaatcaggtcacagagatgagacatatggagccttcagtgtcattgg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaggttttcgtcaatcaggtcacagagatgagacatatggagccttcagtgtcattgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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