Query= MSMg01no394_c04.b1 MSMg01no394_c04.b1 CHROMAT_FILE:
MSMg01no394_c04.b1 PHD_FILE: MSMg01no394_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:24 2005
(511 letters)
>mm_chr4_116945329_116946239
Length = 911
Score = 926 bits (479), Expect = 0.0
Identities = 496/503 (98%), Gaps = 4/503 (0%)
Strand = Plus / Plus
Query: 8 gaattcctgactttcc--gctgttccttgcctcccccaagcaggtgcaatcagaatgtga 65
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctgactt--caggctgttccttgcctcccccaagcaggtgcaatcagaatgtga 265
Query: 66 acatctggacagtgccactaacagctgcccacccactcagtctaacgccacctcgccacc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acatctggacagtgccactaacagctgcccacccactcagtctaacgccacctcgccacc 325
Query: 126 tcaccagagtccgcagccaacactcttcacagtgcacatgccaacactggatcgacgtca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaccagagtccgcagccaacactcttcacagtgcacatgccaacactggatcgacgtca 385
Query: 186 gaggcatcgagtaagagtcctagggaggaggtgggcagagaaagggtcgctgaagtatgc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaggcatcgagtaagagtcctagggaggaggtgggcagagaaagggtcgctgaagtatgc 445
Query: 246 tcaccctctgaaggccgctttctaagcccacagggcactgagctgacggagagcacgcct 305
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 tcaccctctgaaggccgctttctaagcccacagggcactgagctgaccgagagcacgcct 505
Query: 306 cgactccttcctacttaccatgcagatgaggcatttgtatcggtccccccgagatagctg 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgactccttcctacttaccatgcagatgaggcatttgtatcggtccccccgagatagctg 565
Query: 366 ccgttcaagctcccggacccgagccttcagagcctcaaatgtagttacagctgactcttc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ccgttcaagctcccggacccgagccttcagagcctcaaatgtagttacagctgactcttc 625
Query: 426 ggtgattctgtaaagacaacacacagggtaggagggtggaggcagaaccttagacccaga 485
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 626 ggtgattctgtaaagacaacacacagggtaggagggtggaggtagaaccttagacccaga 685
Query: 486 atcccacggagaatctcttctca 508
|||||||||||||||||||||||
Sbjct: 686 atcccacggagaatctcttctca 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_c04.g1 MSMg01no394_c04.g1 CHROMAT_FILE:
MSMg01no394_c04.g1 PHD_FILE: MSMg01no394_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:24 2005
(479 letters)
>mm_chr4_117111653_117112531
Length = 879
Score = 880 bits (455), Expect = 0.0
Identities = 473/479 (98%)
Strand = Plus / Minus
Query: 1 agaaggaatctttggaggagaattgaaccctattattaggtgtgtttaagtggagactaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agaaggaatctttggaggagaattgaaccctattattaggtgtgtttaagtggagactaa 620
Query: 61 atggactgagtattaaggctgatgaagggttctctcagccatctgatataaaggaaaggt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atggaccgagtattaaggctgatgaagggttctctcagccatctgatataaaggaaaggt 560
Query: 121 tcctagcacctgaagatacagattcctttgagtccttatggtctttaattctttatagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcctagcacctgaagatacagattcctttgagtccttatggtctttaattctttatagtg 500
Query: 181 ctggtggaggggtgctgacaaggcccagcagcctgggccaaacaggggaggaggatagaa 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctggtggaggggtgttgacaaggcccagcagcctgggccaaacaggggaggaggatagaa 440
Query: 241 gttctcccacaaagcctcaaaaactcggcaatgggggcaaacctgaagttcatttctcaa 300
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 439 gttctcccacaaagcctcaaaaactcggcagtgggggcaaacctggagttcatttctcaa 380
Query: 301 acctcagacctcctctctagggacagagtcccagatctgcctcttaacgacactgagtga 360
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 379 acctcatacctcctctctagggacagagtcccagatctgcctcttaacgacactaagtga 320
Query: 361 gtttattaatatgccattctttcaatcaatcaatatttaaggagttcccctgtgtcaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtttattaatatgccattctttcaatcaatcaatatttaaggagttcccctgtgtcaggc 260
Query: 421 acagccccatccccgtgctgcatgcattaatcaaacattttccagacaaatgtaaaatt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acagccccatccccgtgctgcatgcattaatcaaacattttccagacaaatgtaaaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
