Query= MSMg01no394_d14.b1 MSMg01no394_d14.b1 CHROMAT_FILE:
MSMg01no394_d14.b1 PHD_FILE: MSMg01no394_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:32 2005
(474 letters)
>mm_chr4_100701183_100702059
Length = 877
Score = 830 bits (429), Expect = 0.0
Identities = 464/477 (97%), Gaps = 3/477 (0%)
Strand = Plus / Plus
Query: 1 caggtcttcaggcttgtactagaactgaacctttggttctctttagttctagtttgctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtcttcaggcttgtactagaactgaacctttggttctctttagttctagtttgctga 260
Query: 61 ctgacttgtagatttactgacatggcccgacccttctaataactctctatgaacatgtgt 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ctgacttgtagatttactgacatggcccgatccttctaataactctctatgaacatgtgt 320
Query: 121 atgtggaaatcattgaagaagactaaattctcagcttcaatcatggtacctggcatgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtggaaatcattgaagaagactaaattctcagcttcaatcatggtacctggcatgtaa 380
Query: 181 gagataacacatagagatttattatataagcaattgaagacatcattaactacctgcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagataacacatagagatttattatataagcaattgaagacatcattaactacctgcatt 440
Query: 241 atctacatgttgaaacattgacaccattgaagaaaagccttcagaaaatatacacaatga 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 atctacaggctgaaacattgacaccattgaagaaaagccttcagaaaatatacacgatga 500
Query: 301 atgatgggaagttgggcaacaaccgtgaaatcattcatctgcttaaccactcaacaattt 360
|||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 atgatgggaagttgagcaatgaccgtgaaatcattcatctgcttacccactcaacaattt 560
Query: 361 gtcaactcgatggtatgttaattgtgtacttgtctaccaagctcttaacacatgaacatg 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gtcaactcgatggtatgttaattgtgtacttgtctaccaagctctaaacacatgaacatg 620
Query: 421 aatatagagaacatttgtacaa---gtgttgtaactgttcccagaaagatggtaccc 474
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 621 aatatagagaacatttgtacaacaagtgttgtaactgttcccagaaagatggcaccc 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 877
Length adjustment: 10
Effective length of query: 464
Effective length of database: 867
Effective search space: 402288
Effective search space used: 402288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_d14.g1 MSMg01no394_d14.g1 CHROMAT_FILE:
MSMg01no394_d14.g1 PHD_FILE: MSMg01no394_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:32 2005
(301 letters)
>mm_chr4_100892538_100893238
Length = 701
Score = 567 bits (293), Expect = e-166
Identities = 296/297 (99%)
Strand = Plus / Minus
Query: 1 tccatatggagctagctactttttttctttcagtttatattcagctttatttttaattaa 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 497 tccatatggagctagctactttttttctttcagtttatatccagctttatttttaattaa 438
Query: 61 ctatgaagaatactcaccaagaacttagaaaaaaaatgaaaagagcccttaaaaaaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctatgaagaatactcaccaagaacttagaaaaaaaatgaaaagagcccttaaaaaaatag 378
Query: 121 ttccctggcaaatgggtggaagggactgtgctgagagaagagaatgttctccatgctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttccctggcaaatgggtggaagggactgtgctgagagaagagaatgttctccatgctgtg 318
Query: 181 gatgccattttgtcagtgacaaagatgaggcacttctggagctcctccagccacatgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gatgccattttgtcagtgacaaagatgaggcacttctggagctcctccagccacatgctc 258
Query: 241 agaggctcaactgtcctctcacgtgagatgattagtgtgtagtattggttttaaagg 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agaggctcaactgtcctctcacgtgagatgattagtgtgtagtattggttttaaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
