Query= MSMg01no394_g03.b1 MSMg01no394_g03.b1 CHROMAT_FILE:
MSMg01no394_g03.b1 PHD_FILE: MSMg01no394_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:45 2005
(491 letters)
>mm_chr4_35355423_35356311
Length = 889
Score = 864 bits (447), Expect = 0.0
Identities = 482/505 (95%), Gaps = 20/505 (3%)
Strand = Plus / Minus
Query: 5 gaattccctttgtctcgggttaactgagttgttttctattgcttgtgatcaaattcatct 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaattccctttgact-gggttaactgagttgttttctattgcttgtgatcaaattcatct 537
Query: 65 ggcgattgtgggtgattatcacacagcattggagtgccaaagggcaagaccaatgctagc 124
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 536 ggcgattgtgggtgattatcacacagcattggagtgccaaaggg-aagaccaatgctagc 478
Query: 125 ccaatgggcaaacgacttctacttttcccacctttccttcttatctttaaagatatttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccaatgggcaaacgacttctacttttcccacctttccttcttatctttaaagatatttta 418
Query: 185 ttttatcacagagatgctagagctatggctttgtcattatttacttttgtcttgctagaa 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttttatcatagagatgctagagctatggctttgtcattatttacttttgtcttgctagaa 358
Query: 245 ctgtcatttgacagacagaggtaacagtgatgttaagaaagattctctcttaaagccctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctgtcatttgacagacagaggtaacagtgatgttaagaaagattctctcttaaagccctt 298
Query: 305 gtagaactggtacactgactgtggagcctgaggtcattgctcaaaagatcctgcagttat 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gtagagctggtacactgactgtggagcctgaggtcattgctcaaaagatcctgcagttat 238
Query: 365 atacaaacacagcaaagctgtgcttctaaacc------------------cacacacaca 406
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 237 atacaaacacagcaaagctgtgcttctaaacccccccccccccacacacacacacacaca 178
Query: 407 cacttttccttatgctgaagaactagccaccccttgacacacaagtgatccctgaatgag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cacttttccttatgctgaagaactagccaccccttgacacacaagtgatccctgaatgag 118
Query: 467 gaaacattaggcattcggaggtaag 491
|||||||||||||||||||||||||
Sbjct: 117 gaaacattaggcattcggaggtaag 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 889
Length adjustment: 10
Effective length of query: 481
Effective length of database: 879
Effective search space: 422799
Effective search space used: 422799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_g03.g1 MSMg01no394_g03.g1 CHROMAT_FILE:
MSMg01no394_g03.g1 PHD_FILE: MSMg01no394_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:45 2005
(491 letters)
>mm_chr4_35161454_35162341
Length = 888
Score = 903 bits (467), Expect = 0.0
Identities = 484/491 (98%), Gaps = 3/491 (0%)
Strand = Plus / Plus
Query: 1 accaggaagtctcctctcaacagccagcttccacattcaaaatgggacataatctatcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaggaagtctcctctcaacagccagcttccacattcaaaatgggacataatctatcca 260
Query: 61 aatgcatactgaagttaccacatagaatcagtgagacagaagagtctgcacccgcaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgcatactgaagttaccacatagaatcagtgagacagaagagtctgcacccgcaaaac 320
Query: 121 atgaccttgaatttctacttcccggcatcttgtttgcagcataactgcggtgtgtgacat 180
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaccttgaatttctatttcccggcatcttgtttgcagcataactgcggtgtgtgacat 380
Query: 181 gagcgacaccccctaacatttaccaccatttctcccatcagtttatgatcacctaaataa 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gagcgacaccccctaacatttacca---tttctcccatcagtttatgatcacctaaataa 437
Query: 241 gatgctgacattgccaagtgtctatcaatctcagctaaatatatttaaaattatcaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gatgctgacattgccaagtgtctatcaatctcagctaaatatatttaaaattatcaatta 497
Query: 301 cttatactcacctcagtaataaacttgctcatttaagtttcatgaaatgattatttaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cttatactcacctcagtaataaacttgctcatttaagtttcatgaaatgattatttaaac 557
Query: 361 ccctcacatctattttaaagttagaacctcaaattaagggttgaggattatattccactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccctcacatctattttaaagttagaacctcaaattaagggttgaggattatattccactt 617
Query: 421 ggtgacagaacagctgcctggcatgtatgaggaggccctaggtctcatcctcaacacacg 480
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 618 ggtgacagaacagctgcctggcatgtataaggaggccctagatctcatcctcaacacacg 677
Query: 481 tgcagaccggg 491
|||||||||||
Sbjct: 678 tgcagaccggg 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 888
Length adjustment: 10
Effective length of query: 481
Effective length of database: 878
Effective search space: 422318
Effective search space used: 422318
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
