BAC Information

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BAC

Clone NameMSMg01-394G11
Chromosome4 (Build37)
Map Location 102,202,534 - 102,357,816
singlet/doubletdoublet
Overlap genePde4b
Upstream geneLOC669460, Dnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739
Downstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394G11.T7 (MSMg01no394_g11.b1)MSMg01-394G11.TJ (MSMg01no394_g11.g1)
ACCAG495468AG495469
length875781
length of high quality
(start - end)		201 (50 - 250)375 (152 - 526)
definitionCHROMAT_FILE: MSMg01no394_g11.b1 PHD_FILE: MSMg01no394_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:46 2005CHROMAT_FILE: MSMg01no394_g11.g1 PHD_FILE: MSMg01no394_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,357,621 - 102,357,816)(102,202,534 - 102,202,908)
sequence
NNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACATGATTCAGCTGATAGAGGACTGCTGCCTATCTTGATA
GAACTGGGAAGCTGACACAAACATTCTGGGTCAACCAACTACCTCTATGT
CCTTATCTTTGCCTCTTCTGTCCATACCTGCCATCCCAGGCAAATCTACT
CAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGN
ATCTTTTNTTATTCTCTTTTTTTTTNNTTTTTTCTTTTTATCTTCCTCCC
CTCCCTCTCTCCCCCCCCTCTTTTTTTTTCTTTNCCCNCCCCTTTTCCTC
CCTTTTTCACTTTTTTTCTCCTTTCCCCCTTTTTCATTCCTTTCTCCCTT
TTTTTCCTTTTCCTCTTTTCTCCCCCCCCTCTTCTTTTTTTCACTTTCTT
CTCCTTTCCCTCCCCCCCCTTTCTTTCTCTTTTTTTTTTCCCCTTCCACC
TTTTTCTCCCTTCTCCTCCTTCTCTTCCTTTACTTCTTATCCTTCCACAC
TCATATTTCCTCCTTATCCNTTTTTCCTCTCTTTTACATCCCCCACTTAC
ACCCCTTCCTTTCCTTTCTAACCTATCCTCCCCTTCTTTTATTTCCTTAC
CTCTTCTATACTCTTTTTATCCCTACCTTCTAACTTTTTTTCACTTTTTC
CCCTTTTTTCCTTATACCCTTATCTTACATATCTCTTTTTTCCCTCCTTT
CCACTCTCTTTCCCTCACCATCCCTTTTCCTACTCCTTTTTCTTATATCC
CTNTTTCCTCCCCTATATCTTCCTTTTCTTTTTCCAATCCCTTTTCCTCA
ATTACTCCCCTCTCATTACTCCTTC

TTTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XAGCCCAAATACAAGTGATTTGCTATGCACTCAGCAAATCACCCTTCATT
GAACTGATGCAATTGATGCCGTTGGAAGGTGTGGGTTGATTTCAATTCCA
GGAGTAATGATGGGGTCCACTACCATTCTTGCCCTTAGTATATGCTCACA
GATCTGCTTAGCCACAGAGAACCTTCTACATTGCATACCCCCATGACCCC
CACTACCCCCCAACGCCCCACTCCTACCTACCACTCAGCAGGGGAAAACT
GTAACATCCATGAAAGAAATATGCAGAGTCAGCTACAGAACCATCCAGAG
GGTATTAGCAATGGACTGGCTGCTTTTGAGTTTCATACTTACATGAGGTC
TAAGCTAGACACTATCTGGTCAACCTTGCAGGCCTTCTCTCAGGGGCAAG
GTCCTTTCTCGATCTAGCATTTACTACCTTCGTTCTGCAATGCCAAGATA
TCATGGGGTATGGAAGGATGCAAAATCTCTCCTTCATAGCGAATACCTTC
TTCCTGAAAGCCGGGGATTGCCCATAAAATTTCTTGGAACATGTGCCTTT
TGTTGAGTGGACTAACTCGAAGTTTTTTCCGGAAAAACATTTCCCTTTGT
ATTTTTATACTCACCTTGGTGCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_g11.b1 MSMg01no394_g11.b1 CHROMAT_FILE:
MSMg01no394_g11.b1 PHD_FILE: MSMg01no394_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:46 2005
         (201 letters)



>mm_chr4_102357463_102358063
          Length = 601

 Score =  364 bits (188), Expect = e-105
 Identities = 194/196 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacatgattcagctgatagaggactgctgcctatcttgatagaactgggaagct 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaattccacatgaataagctgatagaggactgctgcctatcttgatagaactgggaagct 295

                                                                       
Query: 65  gacacaaacattctgggtcaaccaactacctctatgtccttatctttgcctcttctgtcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gacacaaacattctgggtcaaccaactacctctatgtccttatctttgcctcttctgtcc 235

                                                                       
Query: 125 atacctgccatcccaggcaaatctactcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atacctgccatcccaggcaaatctactcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 175

                           
Query: 185 tgtgtgtgtgtgtgtg 200
           ||||||||||||||||
Sbjct: 174 tgtgtgtgtgtgtgtg 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no394_g11.g1 MSMg01no394_g11.g1 CHROMAT_FILE:
MSMg01no394_g11.g1 PHD_FILE: MSMg01no394_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:46 2005
         (375 letters)



>mm_chr4_102202334_102203108
          Length = 775

 Score =  717 bits (371), Expect = 0.0
 Identities = 374/375 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcccaaatacaagtgatttgctatgcactcagcaaatcacccttcattgaactgatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcccaaatacaagtgatttgctatgcactcagcaaatcacccttcattgaactgatgca 260

                                                                       
Query: 61  attgatgccgttggaaggtgtgggttgatttcaattccaggagtaatgatggggtccact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgatgccgttggaaggtgtgggttgatttcaattccaggagtaatgatggggtccact 320

                                                                       
Query: 121 accattcttgcccttagtatatgctcacagatctgcttagccacagagaaccttctacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accattcttgcccttagtatatgctcacagatctgcttagccacagagaaccttctacat 380

                                                                       
Query: 181 tgcatacccccatgacccccactaccccccaacgccccactcctacctaccactcagcag 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tgcatacccccatgacccccactaccccccaacaccccactcctacctaccactcagcag 440

                                                                       
Query: 241 gggaaaactgtaacatccatgaaagaaatatgcagagtcagctacagaaccatccagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaaaactgtaacatccatgaaagaaatatgcagagtcagctacagaaccatccagagg 500

                                                                       
Query: 301 gtattagcaatggactggctgcttttgagtttcatacttacatgaggtctaagctagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtattagcaatggactggctgcttttgagtttcatacttacatgaggtctaagctagaca 560

                          
Query: 361 ctatctggtcaacct 375
           |||||||||||||||
Sbjct: 561 ctatctggtcaacct 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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