BAC Information

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BAC

Clone NameMSMg01-394K02
Chromosome4 (Build37)
Map Location 29,065,629 - 29,065,995
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394K02.T7 (MSMg01no394_k02.b1)MSMg01-394K02.TJ (MSMg01no394_k02.g1)
ACCAG495641AG495642
length1,463766
length of high quality
(start - end)
---504 (83 - 586)
definitionCHROMAT_FILE: MSMg01no394_k02.b1 PHD_FILE: MSMg01no394_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:04 2005CHROMAT_FILE: MSMg01no394_k02.g1 PHD_FILE: MSMg01no394_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCAGACTTCTATAACGCCGTTACCCTACCCTATATCATCATCGCGCCACA
TCCTACATACACTACTTATCCATATTTCTCCAACACACCAAACCCGATGA
CCACCACCACACCCAATGCTACTTTATTTTTTTCTCTTCCTCCACCGACG
CATTCTTNCACAAACACCCTCCCTTCTCCCTCTTATCCAGATCACTCTTT
TGCTCTATTTCTACAACTTTACGTGCCAACACACCTCCACTATTCAACAC
ACACACCCACTTTTTCATACTCCCCCTCATACATTCATTCCCCTCACCTC
ATACCCCACAATACAACCTTACCTTACCCCGTTCGCCCTCCCTTCAGACG
CTCATTTACGCACCATACTCGTATACCCATCGTCTACTCAATCGCANCTC
TACATTTTCGACACAATCGATACCTAGCATACNAATACATATAATATTAT
ACTACATACGACGACANCATCCCCTCGATTCTCTATATATACCCTCATCC
ACATCTACTCCTCCCGTACCATCACAAGATGACATTTAAACCAACCTCAT
CTAAACATCTTCATTACACAGTCATATTACATTTCCCCTAAAACAACCCA
ATATCTTATCTTGTTCTACCATATCACCCAGCCGCCGCCGCCTTCACGTT
CCAATATAACTCTCACACCTCTTAATCAACTGTTCCACTACTTCTATTCA
CCATTTCCATTTCTTACCCCACATCCCCTACCTTATTACACCCCTAATCT
ATCAAATAATTAAACACTCCCTAATCTCACTATCATTCCTAACGATCACA
CTTTATATATCAAAACNACCCCATCCGTCACTGACCTTTTATACACACTA
CCAATACCATACTTTACACTACCCCACCACCACCATCGACCTAACGTAAT
CGCCGTTTTTCTCCATAACGATCTTACATCACCGCACACGCTACAGCTCG
TACACCTCCATATATATCCTTTACCCGCCTATATATAAACATACGGACGC
CGTATTATTCTCCCTTATTAACATCAATCCACGCGTATTCTCTATTATCG
CGCACACACCACCTCCCGCCACGTCACGATCACCCATTATATACACCACA
CACTCACCTATTACGCACCGCTCTCCACCTATCCGCTCGCCTATATATCG
CTATATCACGTGCACACCCTCGCTCATACCCTACATCTATATACCTCTTT
ACCTCACCTATCCCACGTGTACTATACAATTATCTCGCTCTCTTCTATAC
ACATAATCCGCGCTTCTCTAACACACGATTCTCACACGCCATACACCACG
CCGCATCTATCACTTCTCCNGCTTACCTCTATCCTCTCTCTATCACCTAT
ATATACCGACACGCCCGTATCCGCAACCGTACTAACACGCTTCGCCCCAA
TTCTAATATACACCTNCCTCACCATTTTCTCTCGTCTCCCGTCATTACAT
AATCACATACGCA
CCCCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATACGAAAGCATAAAA
TAAAAAGGTCTTTGTCTGGATTATAGTTATACATATGCTTAGACTCTTAA
AAGTCACTGGTACACATCATGTGTGTGTTTTAAACAACTGAAATGTGGAA
AAAGTGTTAAAATCATAAAGTTGGGTTTTATTTAGATTTTTTAAAAAAAA
TATTGTATTTATATGTTTTGCCTACATATTTGTGCACCATTGTCTGGTGC
CTGAAGAGGGGAAAAGAGCAGCGCAGACTCCCTAGAACTGGCGCTATAGG
CTGTTGCAAGACATGCGGTAGCTGCTGGGAATCAAAACCAGGTTCTTAGG
AAGATCAGCCAGTGCTCTCAAAAATTGAGTCATCTCTCCAGGCCCCTGAA
AAATAATTTTTAAGAGTGACTGAAATGCCATAATGTATGTTTTTAATAAG
TGAGTTCATAGGATTCATTTCGTACTACCTCACCTGAGAATGCATATTCT
CTATCTGTATATTCTCTATTTGTATATTCTCTATCTGTATGTTCTCTATC
TGCATATTCTTTATCCGAACTATTCCCTATCTGTAAATTCCCCATCCGCA
TATTCTCTTATCTTTGCGTATTTTACAAAAAACTTCCCTAGAATTTCTTA
CTGGACTTTCCTCAGATAAAACCCTCCCATTATTCCCAAATTATCGCCCA
ATCATACCTTTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_k02.g1 MSMg01no394_k02.g1 CHROMAT_FILE:
MSMg01no394_k02.g1 PHD_FILE: MSMg01no394_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:04 2005
         (504 letters)



>mm_chr4_29065629_29066531
          Length = 903

 Score =  495 bits (256), Expect = e-144
 Identities = 321/368 (87%), Gaps = 41/368 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatacgaaagcataaaataaaaaggtctttgtctggattatagttatacatatgcttag 60
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 367 tcatacgaaagcataaaataaaaaggtttttgtctggattatacttatacatatgcttag 308

                                                                       
Query: 61  actcttaaaagtcactggtacacatcatgtgtgtgttttaaacaactgaaatgtggaaaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 307 actcttaaaagtcactggtacacaccatgtgtgtgttttaaacaactgaaatgtggaaaa 248

                                                                       
Query: 121 agtgttaaaatcataaagttgggttttatttagattttttaaaaaaaatattgtatttat 180
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 247 agtattaaaatcataaagttgggtttt-tttagattttttaaaaaaaatattgtatttat 189

                                                                       
Query: 181 atgt--tttgcctacatatttgtgcaccattgtctggtgcctgaagaggggaaaagagca 238
           ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 188 atgtgttttgcctacatatttgtgcaccattgtctggtgcctgaagaggcgaaaagagca 129

                                                                       
Query: 239 gcgcagactccctagaactggcgctataggctgttg------------------------ 274
           ||||||||||||||||||||||||||||||||||||                        
Sbjct: 128 gcgcagactccctagaactggcgctataggctgttgtaagacagattccctagaactggc 69

                                                                       
Query: 275 --------------caagacatgcggtagctgctgggaatcaaaaccaggttcttaggaa 320
                         ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 68  actataggctgttgcaagacatgtggtagctgctgggaatcaaaaccaggttcttaggaa 9

                   
Query: 321 gatcagcc 328
           ||||||||
Sbjct: 8   gatcagcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space:   441142
Effective search space used:   441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)