BAC Information

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BAC

Clone NameMSMg01-394M09
Chromosome4 (Build37)
Map Location 116,708,293 - 116,708,691
singlet/doubletsinglet
Overlap geneEif2b3
Upstream geneNsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3
Downstream genePtch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394M09.T7 (MSMg01no394_m09.b1)MSMg01-394M09.TJ (MSMg01no394_m09.g1)
ACCAG495751AG495752
length781783
length of high quality
(start - end)
406 (79 - 484)400 (81 - 480)
definitionCHROMAT_FILE: MSMg01no394_m09.b1 PHD_FILE: MSMg01no394_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:17 2005CHROMAT_FILE: MSMg01no394_m09.g1 PHD_FILE: MSMg01no394_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGCCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGAGAGAT
CCGCGGAATTCCAGGCTTCCCACGACTACACAGTGAGACCCTGCTCAAAA
CAAAACAAACAAAACAAAAAGAATGCTTCCCGCTTCTCCAGAGCGCTAGA
GTTTGGTTCCTAGAATCCACATCCAGCAGCCTACAGCTGTTGTACCAGCA
GCTCCTGGGGATCCAGCTCCCTCTTCTGGCCTCCTGAGGCACCTGCACAC
ATGTGGCATACACACCACAGGCTCACATGCACACAAGTTAAACTACAAGG
ATGAAGTACCGATCAATAGATTAGTGTTCTATGTATGCTTTAACAAATTG
TTGCATACAGATGGCCTAAAATGATAGAAACACTCTCTGTCACAGTTCTG
GAAAGCAGACATCCAGAAAGAATGAGCAGTGGAGCTGGCTGTTTCAGGAG
GCGCACAGGGAATCACTGTGGACTTCTCTAGCAGGTGTAGCCGTTGCTGC
TAACCTTTAGGTAGACTTGCATTATTACACTGTCTTCTCCAGATCTGTGC
CCCCCCAACGTCTTCTTATAGGCTAACAATCTTTTTTTCTAGTACCCTCC
CAGTATTATGCCCCCCTTGACTCCTCCCGGATAAGCTTTTTCCCTTCTCT
CCCCTTTCTTTTCTTTTCCCTTTCCTTTCTTTTCCTTTCCTTCCTTTTTT
CTCTTTTTTTCTTCCATTTTCCCCCTCCTCTTCCTTTCCTTTCCATACCT
TATTCTTTTTCCTCCCTTTTCTTCCCTCTTT
NTTTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCAGTCTAATCTACAC
AGAGTTCCAGGACAGCCAGGATTACAGATGGGATACATGGTGAGGTTCAA
ATGAATCATTAGGCACAAAGATCTATAGCCAGTTAATCACGATTAAAAAG
ACCACTACTACTCAAGTTAGATCATTAAAGACTGCCTCTCAACTCCTTGG
CAACTGCCTGAGTAATCATATATTTTTAGGGATCCATTCCGGTCAGATTT
CAGTTTGGAGCCAATGGCTACACTTTATCTTGCTACTATTAGTTCAGCTT
GTTTTTTTACGGCAGCTATACTACTAATTTTGTTTATATATAAAATATAC
CTAGCTGGGCAGTGGAGGTGTACACCTTTAATCCCAGCACTCATGAAGGA
GAGGCAGGTGGATCTCTTGAGTTCCAGGCCAGCCTGGTCTATAGAGCAAC
TTCCAGGACAGCCTAGGCTGAACACAGACACCCTGAATGAAAACACTACA
TATCCCACCTAAGAAAACCCTTTTACAACCTATATATATCACTCCCGGTA
CCATGCCACACATTGGCATGATCTCTGCGAAGTCCATTTCTCCCCTGCTC
TTCCTTATTACCGCCCTCTTCCCGCCCTTCCCGGGCCTTCTTTTAACAGT
ATTCTGGCTTCCTTACATTATAAGTTTTGATCGAATTAACTTTCACTTAG
GTTCCCTTTCCTCCCCTTTAGTTTTTTCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_m09.g1 MSMg01no394_m09.g1 CHROMAT_FILE:
MSMg01no394_m09.g1 PHD_FILE: MSMg01no394_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:17 2005
         (400 letters)



>mm_chr4_116708125_116708923
          Length = 799

 Score =  750 bits (388), Expect = 0.0
 Identities = 397/400 (99%), Gaps = 1/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaccagtctaatctacacagagttccaggacagccaggattacagatgggatacatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagaccagtctaatctacacagagttccaggacagccaggattacagatgggatacatgg 508

                                                                       
Query: 61  tgaggttcaaatgaatcattaggcacaaagatctatagccagttaatcacgattaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 507 tgaggttcaaatgaatcattaggcacaaagatctatagccagttaatcatgattaaaaag 448

                                                                       
Query: 121 accactactactcaagttagatcattaaagactgcctctcaactccttggcaactgcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 accactactactcaagttagatcattaaagactgcctctcaactccttggcaactgcctg 388

                                                                       
Query: 181 agtaatcatatatttttagggatccattccggtcagatttcagtttggagccaatggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtaatcatatatttttagggatccattccggtcagatttcagtttggagccaatggcta 328

                                                                       
Query: 241 cactttatcttgctactattagttcagcttgtttttttacggcagctatactactaattt 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacttta-catgctactattagttcagcttgtttttttacggcagctatactactaattt 269

                                                                       
Query: 301 tgtttatatataaaatatacctagctgggcagtggaggtgtacacctttaatcccagcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tgtttatatataaaatatacctagctgggcagtggaggtgtacacctttaatcccagcac 209

                                                   
Query: 361 tcatgaaggagaggcaggtggatctcttgagttccaggcc 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tcatgaaggagaggcaggtggatctcttgagttccaggcc 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 799
Length adjustment: 9
Effective length of query: 391
Effective length of database: 790
Effective search space:   308890
Effective search space used:   308890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)