Query= MSMg01no394_n02.b1 MSMg01no394_n02.b1 CHROMAT_FILE:
MSMg01no394_n02.b1 PHD_FILE: MSMg01no394_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:20 2005
(455 letters)
>mm_chr4_98788763_98789616
Length = 854
Score = 803 bits (415), Expect = 0.0
Identities = 438/451 (97%), Gaps = 10/451 (2%)
Strand = Plus / Plus
Query: 5 gaattcaaggtctatgtgtggggtctgggctgcagtgggtacctacctagctgctacagt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggtctaagtgtggggtctgggctgcagtgggtacctacctagctgctacagt 264
Query: 65 ttcctcgcaggtgttatcaatatccatcgtatacttgactttgtccttggtgcttcagag 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 ttcctcgcaggtgttatcaatatccatggtatacttgactttgtccttggtgcttcagag 324
Query: 125 tctctggatggcttgtctgctttcatgctcccaggcagatgttgtaggcctttatctctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctctggatggcttgtctgctttcatgctcccaggcagatgttgtaggcctttatctctg 384
Query: 185 cttgacaaacatcttctcagtactctcttagagactgagcacattttgctttgaatagtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgacaaacatcttctcagtactctcttagagactgagcacattttgctttgaatagtt 444
Query: 245 ctttgtatacatgactcactagttgccaaagagtctgaaaggacattgcatgcactgtga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctttgtatacatgactcactagttgccaaagagtctgaaaggacattgcatgcactgtga 504
Query: 305 agcttactggaaacagtaggaatggtacaagcggctcaaaaaaaaaaaaaaaaaagtacc 364
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 505 agcttactggaaacagtaggaatggaacaagcggctcaaaaaaaaaaaaaaaaa-gtacc 563
Query: 365 cggagaaatggagtctggggaagactccacacaggaagtgtgaccctgacctcaggaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cggagaaatggagtctggggaagactccacacaggaagtgtgaccctgacctcaggaaga 623
Query: 425 cctgtcctacctgccctgcaactaaccaagt 455
|||||||| ||||||||||||||
Sbjct: 624 cctgtcct---------gcaactaaccaagt 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space: 375580
Effective search space used: 375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_n02.g1 MSMg01no394_n02.g1 CHROMAT_FILE:
MSMg01no394_n02.g1 PHD_FILE: MSMg01no394_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:20 2005
(483 letters)
>mm_chr4_98989330_98990211
Length = 882
Score = 919 bits (475), Expect = 0.0
Identities = 481/483 (99%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 1 catatttttggttctgtttccatgttgatagaataaagccatcagtaggagtccagcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 catatttttggttctgtttccatgttgatagaataaagccatcagtaggagtccagcatc 623
Query: 61 ctttggggaaagtattgtagggcctgctgtactggctgaacataaaagatccaaatatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctttggggaaagtattgtagggcctgctgtactggctgaacataaaagatccaaatatta 563
Query: 121 atgaaggtgatctactgatgctagctgtggttgtagcctctgttgtttgataggtagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgaaggtgatctactgatgctagctgtggttgtagcctctgttgtttgataggtagcaa 503
Query: 181 gcactacctattagcttgagaagtgctttagacctgcctttgccacagttttcagcaatt 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 502 gcactacctattagcttgagaagttctttagacctgcctttgccacagttttcagcaatt 443
Query: 241 ctgtacagaataaggatggtgagaccttttgctcagtatctcatgggtctcatattggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgtacagaataaggatggtgagaccttttgctcagtatctcatgggtctcatattggcc 383
Query: 301 tctgtgaagtcctttctctgagagtgacagggccaaggaggcccccaggagtatcagtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 382 tctgtgaagtcctttctctgagagtgacagggccaaggaggcccccaggag-atcagtgt 324
Query: 361 ggtatgtctgctcaccaggctcctggaagaagacggtattgtgtggaatagtcagtccga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtatgtctgctcaccaggctcctggaagaagacggtattgtgtggaatagtcagtccga 264
Query: 421 aattgatcacgtctagaaaatgagcctgttttattttcaaaggatgggtaatgtgctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aattgatcacgtctagaaaatgagcctgttttattttcaaaggatgggtaatgtgctcag 204
Query: 481 aga 483
|||
Sbjct: 203 aga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space: 412456
Effective search space used: 412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
