BAC Information

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BAC

Clone NameMSMg01-395A03
Chromosome4 (Build37)
Map Location 18,502,517 - 18,502,885
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395A03.T7 (MSMg01no395_a03.b1)MSMg01-395A03.TJ (MSMg01no395_a03.g1)
ACCAG495929AG495930
length771748
length of high quality
(start - end)
538 (45 - 582)427 (81 - 507)
definitionCHROMAT_FILE: MSMg01no395_a03.b1 PHD_FILE: MSMg01no395_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:41 2005CHROMAT_FILE: MSMg01no395_a03.g1 PHD_FILE: MSMg01no395_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGCTTTGCTCTGTGCCCCATTTTTAATAGGGTTATTTGGTTCTT
TGGAGTCTTAACTTCTTGAGTTCTTTGTATACATTTGATTTTAGCCCTCT
ATTGAGTGTAGGAGTGGTAGAGAACTTTTCCCAGTCTGTAGGTTGTCTCT
TTGTCTCCTTGGCAGTGTCCTTAGTGTTACAGAAGCTTTTCAGTTTCATG
AGGTCCTATTTGTCAATTGTTGAACTTAGAGTCTGAGCCGGTAGTGTTCT
GTTCAAGGAATCTTTCCCTGTGCCTCTGTGTCAAGTCTCCTTCTAACTTT
CTATTCTACTAGATTCAGTGTATCTGGTTTTATGTGGAGTTCCTTGATCT
ACTTGAACTTGAGCTTTGTGCAAGGAAATAAAAATGGATCAATTTGCATT
TTTCTACATGCCAATGACCAGTTAAACCAGAACCATTTGTTAAAAATATT
TCTTTTTTCCACTGGATGAGTTTGTCAACCATCAAAAAAACATCTTCTTT
GTCAAAGATCAAGTGACCATANGTGTGTATGCGCGTGTGCGTGTGTGTCC
CCTTTTATTTTTTTCTTCTCCCCCCTCCTCTTCTCCGCCTATTTCCGCCC
AATATTTTTTTTTCCTCTTCTTTCTCCTCCTTTTATTTCTACTCTTTCTG
TTTTATTTGTGCTCATGCGCTCCGCCCCATTTTTCTCCTTTTTCCTTTTT
TCCCCCCCCTTTTTTTCTGCG
NTTTGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCCATGGAATACAAAGT
AAAAAACTAAGTAGCACATCAGGAAAATATAAGCAGCACTTGCTCTAGTT
TCATCTTTTCCTTCAGAGAGACAGTTCTTAGACTAGAAAGTCTATAATCA
CCAGGAGAAACACATCACAAACCAGGATGGGCAAGGAGGTACTGAAATTA
CTTATAGAATTCACTTGGACTCACAGAGACTCTTTGGTATTGAACCAACA
TTAGGCAGCCTGCATGGGTTTAACCTAGACAATCTGTACATATGTTGTAG
GTGTGTAGCTTTGAGATTTGTGAGACTCCTAACTGCCACAGACCACCCCA
GTAGGGTATGGGACAAGGGTCCTTGAAGGCTAGGTGGGTAAGGATTCAGC
AGTGACAAACAGAAACAAACAAAGAGGCAGTTTGAATCTGAGTGTGTTTT
GCAGCTCTCAATCAAGGGTTTTTATACATAAACAAACAATTATTCCAACT
CTAGAAGATGCGTTCAATGAAGCAGTCTTGGACAGGACAGATATCATCAT
AGTTGTTTGGCACAGGAAAGCACATAAATCTTCTAAGGTTAACAGCATAA
TTTCCCGAGTAGGTTAATAACCTTCTATGGCTCGTATTTAACATCCTAGC
ACTCATTTCCTTTTTTTTTAACCTTCTCACCTTAACGTTTCACATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_a03.g1 MSMg01no395_a03.g1 CHROMAT_FILE:
MSMg01no395_a03.g1 PHD_FILE: MSMg01no395_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:41 2005
         (427 letters)



>mm_chr4_18502517_18503343
          Length = 827

 Score =  659 bits (341), Expect = 0.0
 Identities = 362/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcccatggaatacaaagtaaaaaactaagtagcacatcaggaaaatataagcagcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttgcccatggaatacaaagtaaaaaactaagtagcacatcaggaaaatataagcagcact 310

                                                                       
Query: 61  tgctctagtttcatcttttccttcagagagacagttcttagactagaaagtctataatca 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 309 tgctctagtttcatcttttccttcagaaagacagttcttagactagaaagtctataatca 250

                                                                       
Query: 121 ccaggagaaacacatcacaaaccaggatgggcaaggaggtactgaaattacttatagaat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ccaggagaaacacatcacacaccaggatgggcaaggaggtactgaaattacttatagaat 190

                                                                       
Query: 181 tcacttggactcacagagactctttggtattgaaccaacattaggcagcctgcatgggtt 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 189 tcacttggactcacagagactctttggtactgaaccaacattaggcagcctgcatgggtt 130

                                                                       
Query: 241 taacctagacaatctgtacatatgttgtaggtgtgtagctttgagatttgtgagactcct 300
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 129 taacctagacaatctgtacatatgttgtaggcatgtagctttgagatttgtgagactcct 70

                                                                       
Query: 301 aactgccacagaccaccccagtagggtatgggacaagggtccttgaaggctaggtgggta 360
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 69  aactgccacagaccaccccagtagggtatgggacaagggtcctcgaagcctaggtgggta 10

                    
Query: 361 aggattcag 369
           |||||||||
Sbjct: 9   aggattcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)