BAC Information

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BAC

Clone NameMSMg01-395B15
Chromosome4 (Build37)
Map Location 24,621,376 - 24,621,762
singlet/doubletsinglet
Overlap geneKlhl32
Upstream geneLOC623873, LOC664973, F730047E07Rik
Downstream gene1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395B15.T7 (MSMg01no395_b15.b1)MSMg01-395B15.TJ (MSMg01no395_b15.g1)
ACCAG495999AG496000
length758918
length of high quality
(start - end)
456 (48 - 503)60 (79 - 138)
definitionCHROMAT_FILE: MSMg01no395_b15.b1 PHD_FILE: MSMg01no395_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:50 2005CHROMAT_FILE: MSMg01no395_b15.g1 PHD_FILE: MSMg01no395_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCTGTTCTATAGCACAAAAATATTTAAATATGTCTTCGAAGA
CTGCCAGAATTAGAACATGTTTTTTCTTATGCATTCTGAATTGCTTTTAA
TACTTGGTTTTTATTTAATCAAAACATATAAAATGTATATTTTTATTAGC
ATATGGATATATAGTTACTTAAGGCTATTCAGAAATGTTTAAATATTTGT
ATATAAATATGTCTCTGTATATATTTTTTGTGTATAAATATATCAATGTA
TGTATTTATACACACAAAATACCTGTGCTTACATTATAAATAAGTCTGAT
CTACATGATCATTGAAATGCTTATTTTCTTTCTTAACCATTTGACTTTAT
CCTATCAACCCCTATGCAGTATTGGGAAAACTCATAGTCCTTTTACACAC
ATGATAAACATGATAATTTATTTTCATGCATGATTCATTCCAAGGCTATT
AAAAGTTGGGCTGTTTGTATCTGTTTGTTTTAACCTGTTCCAGCCCCTTG
CCATATATCCATGCTAGTACCCTTTAATTNTGCTTCCTTGACTCCTANAA
ACAGCCCTTCCCTGCTGCATTGGGTCGGGCAGCCCCGCAATACCCTGAAT
TATAACTAGGGTGGAACCCCCATAGGAAACAGGTGGTAATCCCACCGGCA
CCGTGGCCTTGGAAAAAAAAGGTTTGGCCCCCCCCCGCAAATTCTTATTG
GCACCCAN
NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACATTAAGGAGGGCAATCC
ACTTTACTGAGTCTACTAATTTAAATGTTAACTTCAGAAAATATANNNAG
TATGTATCAGAACAACNNNTTTTAATCTGCTATCTGGNAATTTGTGCTGG
ATTAAGTTGAACCACANACCCTATTTGGATTTANNNNNNATTTTGGGGNG
TGTGTCCNNTTNTTTAATTGNNNNNNNNTNTTNNNTTNNTNNNTNCCCTA
TCCGTTCCAGCGCGTCTTCTTTAGAGGGGGAGGAGGCAGAAGGAGGGGAG
GGGCGAGGTGGAGAAGAGGACAGGAGAGGAGAGAGGCGAGGAGGAGGGAG
GAGAGGAGAGGGAGGGAGAAGGAGGGGAAGCGGCGAGGAGAAGAGGGGGG
GACCAGGAGACGAGTGACGGCGACAGGGGGGGGGGGTGCNNNNNNNNNNN
CNNNNNNAAAAAAACCGGGGGGGGTGGNNNNNNNNNNNNNNNNNNNNNNN
ACCACGCCGAGGCCCNNTTTTTTNNNNNNNNNTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNCNNNNNNCNNNCNNNN
NNNNNTNCCCCNNCNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCNNTNNCCNNNCTTNTNNNTCTCTTNTTTTTTTTTTTTTTTTTTT
TTNNNCCCCCCCTTTCCTNCCCTCTTTTTTTTTTNTTCNTTTTTTTTTTT
TTTNTTTTTNTTTTTTTTTTTCNNTTTTTTTTTCTTTCTCCTTTTTTTTT
TTTTTTTNNTTTTTTTTNNNNTTTTNTTTTTTTTTTTTTTTTTTCTTTTC
TTTTATATGGTATGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_b15.b1 MSMg01no395_b15.b1 CHROMAT_FILE:
MSMg01no395_b15.b1 PHD_FILE: MSMg01no395_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:50 2005
         (456 letters)



>mm_chr4_24620907_24621762
          Length = 856

 Score =  741 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 70  atgttttttcttatgcattctgaattgcttttaatacttggtttttatttaatcaaaaca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 atgttttttcttatgcattctgaattgcttttaatacttggtttttatttaatcaaaaca 797

                                                                       
Query: 130 tataaaatgtatatttttattagcatatggatatatagttacttaaggctattcagaaat 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tataaaatgtatatttttattagcatatggatatatagttacttaaggctattcagaaat 737

                                                                       
Query: 190 gtttaaatatttgtatataaatatgtctctgtatatattttttgtgtataaatatatcaa 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gtttaaatatttgtatataaatatgtctctgtatatattttttgtgtataaatatatcaa 677

                                                                       
Query: 250 tgtatgtatttatacacacaaaatacctgtgcttacattataaataagtctgatctacat 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgtatgtatttatacacacaaaatacctgtgcttacattataaataagtctgatctacat 617

                                                                       
Query: 310 gatcattgaaatgcttattttctttcttaaccatttgactttatcctatcaacccctatg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gatcattgaaatgcttattttctttcttaaccatttgactttatcctatcaacccctatg 557

                                                                       
Query: 370 cagtattgggaaaactcatagtccttttacacacatgataaacatgataatttattttca 429
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tagtattgggaaaactcatagtccttttacacacatgataaacatgataatttattttca 497

                                      
Query: 430 tgcatgattcattccaaggctattaaa 456
           |||||||||||||||||||||||||||
Sbjct: 496 tgcatgattcattccaaggctattaaa 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)