BAC Information

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BAC

Clone NameMSMg01-395B18
Chromosome4 (Build37)
Map Location 146,165,081 - 146,165,607
singlet/doubletsinglet
Overlap geneOTTMUSG00000010694
Upstream geneLOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, LOC626480
Downstream geneLOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395B18.T7 (MSMg01no395_b18.b1)MSMg01-395B18.TJ (MSMg01no395_b18.g1)
ACCAG496005AG496006
length781764
length of high quality
(start - end)		493 (46 - 538)525 (76 - 600)
definitionCHROMAT_FILE: MSMg01no395_b18.b1 PHD_FILE: MSMg01no395_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:50 2005CHROMAT_FILE: MSMg01no395_b18.g1 PHD_FILE: MSMg01no395_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGACAGAGATGGAGTTCCAGTTGATCTTGTCTTTTCCACTGGGTT
TTATCAACTGAGTTGTTCTACAAAGTGGTTTCATAAATATAAGCAAACAC
TGCAGGGCATTGACAATAAAGGTGTTGCTTTTTAGAAACTGACAATAAGT
CTTCATTGCTAACGAGCAGACTTACACAACTCACTGTGTATGAAGAGGTC
AAGCTGGTGCCTCCAAGAACATTGGCTCTTATGTTCCACAGTCCTCATTA
TGGAAAGGGCTTTGCAAGCTACAAAAAGTCAAATATATACACAGAACCAA
CAAAAAAGACATTGATCTAAAATTTGTCCTTTCTCCAAAATATGCTAGGT
CAATGATGTCATGAATTTATTGTGAATAACCAATCAATATCTAATTTGAC
TTAAATACCCAAAGTACCCTTGTGATTATATATATATATATATATATATA
TATATATATATATATATATATATATATATATACACATTGCCTATGTACCT
GAGTGTACTTGTATTACTTGTGCCCCACTTCCCCGTTTTAACTTCCGGAA
CCAGTTTTCTCTAATATTTAAGTTTAGACCTTTTCCCTGGATTTTTTTCC
CCCTCCTTTTTTATTTTTTTGATACCTCCCCGCTTTATATTCCCCCGCCA
CGATCCCTAATACGCCTAATTCCCTCCTGTCCCTGTTCACTCTCTCCCTA
TATTCTCCCCTTTCCCTTCATAATAAACACG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATACAGTAGAGAAAACTTACAAAAA
TGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAA
TCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATGTGA
TAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTCAAA
CAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACAAGA
AATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTTTTC
AAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAATGT
AATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGCTGA
AATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAATTTTT
ATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACACGGGT
AATATTCTTTTCAACAGTCAGTGCTCTAAACTAGAGAATTATTATGAATC
TGAAAACTTTTGAAAACCTTCATGCAATGCTCTAATCTTAAAAAATGGCA
ACTATTATGCTGGCAGTAACTCTGATTATATGATAGTGAGAAAACTTTTT
CTTAACTTTTACCTGTCCCCCTCCAATATATTGTAGAACCCCGCGGAAAC
CCCAAAAATTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_b18.g1 MSMg01no395_b18.g1 CHROMAT_FILE:
MSMg01no395_b18.g1 PHD_FILE: MSMg01no395_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:50 2005
         (525 letters)



>mm_chr4_146164881_146165807
          Length = 927

 Score = 1007 bits (521), Expect = 0.0
 Identities = 525/527 (99%), Gaps = 2/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacagtagagaaaacttacaaaaatgcagtgaatgtgataaatgctttactaataaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacagtagagaaaacttacaaaaatgcagtgaatgtgataaatgctttactaataaagg 260

                                                                       
Query: 61  cagactgagaattaatcagataatttatacatttaaaaaaacccttacaagtattttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagactgagaattaatcagataatttatacatttaaaaaaacccttacaagtattttgta 320

                                                                       
Query: 121 tgtgataaatgcagtacccacaacatcagtctgacaaatcaacagatatttcaaacagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgataaatgcagtacccacaacatcagtctgacaaatcaacagatatttcaaacagta 380

                                                                       
Query: 181 gagcaacattataaatgaaatgaatgagatagtcctttaacaagaaatatcatcttaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcaacattataaatgaaatgaatgagatagtcctttaacaagaaatatcatcttaaaa 440

                                                                       
Query: 241 ttcactggagaattcttccaaaagggaaacttttcaaatacattgacggtttgaatcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcactggagaattcttccaaaagggaaacttttcaaatacattgacggtttgaatcctt 500

                                                                       
Query: 301 tattttggcctatctcttagaatgtaatagataatttatacaggcaagaatcttaacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttggcctatctcttagaatgtaatagataatttatacaggcaagaatcttaacaaa 560

                                                                       
Query: 361 tataatatatgctgaaatatctttgacttcatttcagtgcagaaaaaatatgtaaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tataatatatgctgaaatatctttgacttcatttcagtgcagaaaaaatatgtaaaaaaa 620

                                                                       
Query: 421 t--ttttatgggaaaaatagttctcctggggaaatgtggcatatgttttacacgggtaat 478
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatttttatgggaaaaatagttctcctggggaaatgtggcatatgttttacacgggtaat 680

                                                          
Query: 479 attcttttcaacagtcagtgctctaaactagagaattattatgaatc 525
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attcttttcaacagtcagtgctctaaactagagaattattatgaatc 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 927
Length adjustment: 10
Effective length of query: 515
Effective length of database: 917
Effective search space:   472255
Effective search space used:   472255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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