NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGTATGCCAAATTGGCCTCAAGCTCAGAGATAAACATCTG
CCTTCCAAGTGCTGAGATTAAAGGTATGCACCACCACATCCGCCAAATGT
TTTTCTTTTTTAAAATAGCATCCCTTAAAGGCTATTAGACTGGTTGTTTT
AAAGACATAAAGATAGAACAGTCTACGATTCAAAGCAGTAAGCCATAAAT
TTATATATCTTTTAAACATTGCTGTGAAACATGGCTGTTTCCAGTCCATG
CATGCAGGCAAAACAGAAAGAGACCAAACAACTTCAGTCCTCCAGATCCA
AACACAGCAGCCAGCACAGTGCAGGGCACAGAGAAGGTCAGTGTGTAAAG
ACTGTGGTGGCAGAGCCAAGTTCGAGACCCAGCCTTGCTTCCAGTTTATT
CAGTGACTTCACCTCTTGGAGCCTCCCCTTCCATCTACAAAGGCAAAGGT
CACAGCCATCTCTCTCCAGATTCTGTGTTTCTGTTGTTCCCACTGGAAAC
CAAACAATGTACCTGGAGCACTAAGGTTTTGGTTGGGGCCATTTGTTGAG
ACAGGGACCAAAACTCCTCATCTTTCTGGCTCTACCTTCTTCAAGAAGAC
CTTCAGGGGCTTGGTCTCCCTGCCTGGTGCACCCCCGAAATTGGCCACTG
GCGAAAAAATTCCGAGAATCCTGCCTTTTATAGTTTACCACCGTTTTTCC
CCCCCCAAATATATAATAGGGTGTTCCTTTCCCCA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGGCTTGGCTAGCCTTCTG
AGGATGTTCCTAATGTGATGTCATCCTTTAGGTTGTGTGACATCAAACAG
CTATTGGGAGCCATGTGGACTTTGTATGTGCCTCTGTGAGTAGGCTCTAA
GGGCTGAAGACAGGAACATGGAGTACATTGGAGAATCCCAGTACATGGCA
TAGGCAGAGCAAGTGAATTAGCCATGTGATGTTGATAAAAGATATGACCT
ATTTATTCTAAGTCTTCACATTTCCAACCCACTCCTGTTTCTGGACTCTA
GTATAATCCTTGATCAACTTTGCAAAAATGAGACAATGAAATCTTGCACA
ATGAAGTTCTCATTTTCTGACAAGAAGCCAATTCATTGACTAGGGAGTTC
CTTCCCTTGATATGCTCAATATGAATTTGGCAACGACAACCACAAATATG
GCATCATAGGAGTTTCTGTTAGGTATTGCTTACAGCCCTTCCCTTATGGC
AGNTCAATGTGAACTGTGAATAATCGAGAGAAAAAATTTTTCTGGGAAGA
CATATAGCTAGTTCTTGATGAAAGCAAGCTCCCCGACCTTAACCTTCTTT
TTTCCCCAGCCCTGGAGGTATAAAAAATTCTCATATGGCTTTTTTTTAAA
AAGGAGAGGGATTTTCTCTCTATAGGACTCTTTTCTCAATGAGGGTGGAA
TCGTGCCTATCCGATTCTTATTTTT

Query= MSMg01no395_f05.b1 MSMg01no395_f05.b1 CHROMAT_FILE:
MSMg01no395_f05.b1 PHD_FILE: MSMg01no395_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:08 2005
         (468 letters)



>mm_chr4_31785077_31785944
          Length = 868

 Score =  845 bits (437), Expect = 0.0
 Identities = 458/465 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgtatgccaaattggcctcaagctcagagataaacatctgccttccaagtg 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgtaggccaaattggcctcaagctcagagataaacatctgccttccaagtg 263

                                                                       
Query: 64  ctgagattaaaggtatgcaccaccacatccgccaaatgtttttcttttttaaaatagcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgagattaaaggtatgcaccaccacatccgccaaatgtttttcttttttaaaatagcat 323

                                                                       
Query: 124 cccttaaaggctattagactggttgttttaaagacataaagatagaacagtctacgattc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccttaaaggctattagactggttgttttaaagacataaagatagaacagtctacgattc 383

                                                                       
Query: 184 aaagcagtaagccataaatttatatatcttttaaacattgctgtgaaacatggctgtttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagcagtaagccataaatttatatatcttttaaacattgctgtgaaacatggctgtttc 443

                                                                       
Query: 244 cagtccatgcatgcaggcaaaacagaaagagaccaaacaacttcagtcctccagatccaa 303
           | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 444 cggtccatgcatgcaggcaaaacagaaggagcccaaacaacttcagtcctccagatccaa 503

                                                                       
Query: 304 acacagcagccagcacagtgcagggcacagagaaggtcagtgtgtaaagactgtggtggc 363
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 acacagcagccggcacagtgcagggcacagagaaggtcggtgtgtaaagactgtggtggc 563

                                                                       
Query: 364 agagccaagttcgagacccagccttgcttccagtttattcagtgacttcacctcttggag 423
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agagccaagttcgagacctagccttgcttccagtttattcagtgacttcacctcttggag 623

                                                        
Query: 424 cctccccttccatctacaaaggcaaaggtcacagccatctctctc 468
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cctccccttccatctacaaaggcaaaggtcacagccatctctctc 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no395_f05.g1 MSMg01no395_f05.g1 CHROMAT_FILE:
MSMg01no395_f05.g1 PHD_FILE: MSMg01no395_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:08 2005
         (425 letters)



>mm_chr4_31971152_31971976
          Length = 825

 Score =  814 bits (421), Expect = 0.0
 Identities = 424/425 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaggcttggctagccttctgaggatgttcctaatgtgatgtcatcctttaggttgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctaggcttggctagccttctgaggatgttcctaatgtgatgtcatcctttaggttgtgt 566

                                                                       
Query: 61  gacatcaaacagctattgggagccatgtggactttgtatgtgcctctgtgagtaggctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacatcaaacagctattgggagccatgtggactttgtatgtgcctctgtgagtaggctct 506

                                                                       
Query: 121 aagggctgaagacaggaacatggagtacattggagaatcccagtacatggcataggcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagggctgaagacaggaacatggagtacattggagaatcccagtacatggcataggcaga 446

                                                                       
Query: 181 gcaagtgaattagccatgtgatgttgataaaagatatgacctatttattctaagtcttca 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 gcaagtgaattagccatgtgatgttgataaaagatatggcctatttattctaagtcttca 386

                                                                       
Query: 241 catttccaacccactcctgtttctggactctagtataatccttgatcaactttgcaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttccaacccactcctgtttctggactctagtataatccttgatcaactttgcaaaaa 326

                                                                       
Query: 301 tgagacaatgaaatcttgcacaatgaagttctcattttctgacaagaagccaattcattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagacaatgaaatcttgcacaatgaagttctcattttctgacaagaagccaattcattg 266

                                                                       
Query: 361 actagggagttccttcccttgatatgctcaatatgaatttggcaacgacaaccacaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actagggagttccttcccttgatatgctcaatatgaatttggcaacgacaaccacaaata 206

                
Query: 421 tggca 425
           |||||
Sbjct: 205 tggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)