BAC Information

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BAC

Clone NameMSMg01-395G07
Chromosome4 (Build37)
Map Location 43,996,497 - 44,179,940
singlet/doubletdoublet
Overlap geneCcin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
Upstream geneVcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2
Downstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395G07.T7 (MSMg01no395_g07.b1)MSMg01-395G07.TJ (MSMg01no395_g07.g1)
ACCAG496221AG496222
length809814
length of high quality
(start - end)
247 (71 - 317)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no395_g07.b1 PHD_FILE: MSMg01no395_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:14 2005CHROMAT_FILE: MSMg01no395_g07.g1 PHD_FILE: MSMg01no395_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,996,497 - 43,996,743)(44,179,697 - 44,179,940)
sequence
TTTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATAGAAATCCGCG
GAATTCACAGAGTACACTACAACAGCTTTGTGCTGCAAAACCTGAACAAA
CAGAGGAAGCGTAAAGAGTACTGGGACATGGCCCTGACTGTGGACCATCA
TGTCTTCTTCGCACATCGCAACGTGCTGGCTGCCGTCTCTCCACTAGTGA
AAAGCCTCATCTCCAGCAACGACATGAAGACCACCGATGAACTCTACATC
ACCATTGACCCCAACTACCTGAGCCCAGCCACGGTGGACCAGCTCCTGGA
TTACTTCTACAGCGGCAAATTGTCTATCTCAGAGCATAACGTGGAGTAGC
TGCTCCGGTGCGCACAGTATTTCAATACCCCACGCCTTCGGATTCACTGC
AATGACTTCCTTATTAACTCCATTCCTCGCGCCAACTGCTTGCGCTACCT
CTTCTTGGCTGAGTTGTTCGAGTTCCTAGAACCATCAGATTTGTTCTACT
CTGGTATTCTAGAAATTTTCCACTTTTGCGTCCATCCCCAGATCTCTATG
AATTTTATGTGCTGTCCCCCCCTACTTTTTTCTCCGCCTGCCCCGTTTTG
TACCCCTTTCTCTTTTTTTTTCTTCACACCAGTCTCCTTCCTTCCCCCTT
TCTTTGCCTGTGTTTTCTTTTTTTCTCCCCCCTTCCCACAATCCCCTCTA
TAATTGCATCCACTTATTGTACTATTCTCATGCTTTACCACTCTCCCCTA
CCACTTTTTTTCTTCCCTATTTTATCTTTAATCACTTCCTCCTTTTTAAT
TTTTTCTCC
TCTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTCAGCGAAATTCTTAAGTCTGCCGAATACTGCCT
GTTTTGCAGATACTATTGTAGTAACATTTACTTATCGAAGTTTCTTTAAC
TAGCATGCAACTTTGTAACCAGGATTTAAGGAATTCCAATTACATTTGAA
TCATAGTCGAAAAATAAACTTGTGGTTCATTTTGGGGAACACACTGTCTA
ATGGCGAAATCCAACTTACTTGAAAAATGACAAGATCAAACGTGTTGGGT
TTCTTGCGGAAATAAGTATTTTTTATTTATGACAATTTTGAGTGGGAAAA
TTCCTTTTACTTTATAAACATACTAGTATATATGTATTTTGCCTTTAGAA
AACCTGTTTATCCTAACCCTCGCCGATCATTACGCCTTCACCCCATTGTC
CCTTCCTTTACCCTTATTTCCTTATCCCCCCCTTCCCCCTTCTTCCTTTC
TCTCGCCCTTACTCTTTCCTCTTCCTTTCCACCTTTTTGTCTCCCCCCTT
CCCCTTCGCCCTTTTCCTTCCTCCCGCCGCCCTTTTACCCCTTTCTTTTC
CTTTTCCCCCTTTTCCCCCCTCCCCCCCTTTCCTCCATTTTTTCCCCTCC
CCTTTTCTCTTTTTTCCTCTTTTCCCCCATTCTCTCTTTCCCCTTTTTTC
CCTTTCCCCCCTCTTTTTCCTTTCCCCCCCCCTTTTTCTCCATTTTTACC
CTCTCTTCCCCTCCTTTTCCCCGCCTTTTTTTCCATTTTTTTTCTCTTTC
CTTTTCCCCCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_g07.b1 MSMg01no395_g07.b1 CHROMAT_FILE:
MSMg01no395_g07.b1 PHD_FILE: MSMg01no395_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:14 2005
         (247 letters)



>mm_chr4_43996297_43996943
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagctttgtgctgcaaaacctgaacaaacagaggaagcgtaaagagtactgggacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagctttgtgctgcaaaacctgaacaaacagaggaagcgtaaagagtactgggacatg 260

                                                                       
Query: 61  gccctgactgtggaccatcatgtcttcttcgcacatcgcaacgtgctggctgccgtctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctgactgtggaccatcatgtcttcttcgcacatcgcaacgtgctggctgccgtctct 320

                                                                       
Query: 121 ccactagtgaaaagcctcatctccagcaacgacatgaagaccaccgatgaactctacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactagtgaaaagcctcatctccagcaacgacatgaagaccaccgatgaactctacatc 380

                                                                       
Query: 181 accattgaccccaactacctgagcccagccacggtggaccagctcctggattacttctac 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accatcgaccccaactacctgagcccagccacggtggaccagctcctggattacttctac 440

                  
Query: 241 agcggca 247
           |||||||
Sbjct: 441 agcggca 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no395_g07.g1 MSMg01no395_g07.g1 CHROMAT_FILE:
MSMg01no395_g07.g1 PHD_FILE: MSMg01no395_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:14 2005
         (246 letters)



>mm_chr4_44179497_44180142
          Length = 646

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttaagtctgccgaatactgcctgttttgcagatactattgtagtaacatttactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 attcttaagtctgccgaatactgcctgttttgcagatactattgtagtaacatttactta 385

                                                                       
Query: 61  tcgaagtttctttaactagcatgcaactttgtaaccaggatttaaggaattccaattaca 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acgaagtttctttaactagcatgcaactttgtaaccaggatttaaggaattccaattaca 325

                                                                       
Query: 121 tttgaatcatagtcgaaaaataaacttgtggttcattttggggaacacactgtctaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttgaatcatagtcgaaaaataaacttgtggttcattttggggaacacactgtctaatgg 265

                                                                       
Query: 181 cgaaatccaacttacttgaaaaatgacaagatcaaacgtgttgggtttcttgcggaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgaaatccaacttacttgaaaaatgacaagatcaaacgtgttgggtttcttgcggaaata 205

               
Query: 241 agta 244
           ||||
Sbjct: 204 agta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)