BAC Information

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BAC

Clone NameMSMg01-395I15
Chromosome4 (Build37)
Map Location 16,992,790 - 16,993,032
singlet/doubletsinglet
Overlap genenone
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneLOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395I15.T7 (MSMg01no395_i15.b1)MSMg01-395I15.TJ (MSMg01no395_i15.g1)
ACCAG496333AG496334
length773769
length of high quality
(start - end)
264 (72 - 335)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no395_i15.b1 PHD_FILE: MSMg01no395_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:25 2005CHROMAT_FILE: MSMg01no395_i15.g1 PHD_FILE: MSMg01no395_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATAATTTGCGGCGCTAAACGACTCACAATTCAAAGAGGATGCGCGGA
ATTCTCTTTTACATAAGAAGAAATCCCAGACACCGATGAGAGGCCCACTC
AGCTGCCTATCGACATGGATGCTGGTTTCATGGAAGGTAGGGAGCACCCA
AAAGTCTATTTCCAGGCTCTAATGGCTGGTCTCTGTGGGGCTGGGAAGTG
CTCCACCAATCTGACCTAGGTAATAGGAAGTTAAAGAAATTAGAAGGATT
GCAGGAAAGTCAGTAAGAGAGTTGTGCAGGTTGATAAGAAAGTACAGAGG
AGGAGGAGAAGGATTTTTGTAAGGAAGGAAGGAATGGACCCTTTTCCTCC
TTTTTTCTCTCTCCTTTTTTCTCTCCCTCCTTCTTTTTCCTTTTCCCCTT
TTTCTTTCTCCCCACCTTCTTCTTCCTTCTCTCCCACTTTCTCTACCTCC
TATCTTTCTACTTTTCCCTTATCCCTCTTTTTATCTCCCTAATTCCTTCC
ACCCTCTTCCGCTCTTTTTTTCTCCGTTTACCTCATCCCGCATCTTTTTT
TTTCTCCTCTTACTCTCTTTTCTCCCCCTTCCTTTTTTTTCCCCTATTTT
TTCTTTCTCATCTTCCTTCCCCTTACTCCTCCCTAGCTCCCCCCGGTTTT
TTTTTTTTTCCCTCATTATTTTATCTCCTTTATTTCAACCTATCATTTTA
CTTTGGTGCCTTTTATCGTTCCCCCCACATTTTTTGCCTTGTTTCTTTTC
TACATCCTTTATTTTTTTTTTCT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCACGCGGAATTCACTGGACTCAAGTTGAAAGAACA
GTCTTTCCAAACATGAGTTTGATCTATATCTCTACCACTTCCTAGCTTGA
GATCCAAGGGCAGTAAAATATAATTTAGAGGAAGGATGCCCAGAGTTACT
ACAATATTTTAAAAGAACAACTCCCGAGAACATCTGGTCAAAAAAAAAAA
GTGTGTAACACCCTGAAAAAATTTGTCTGGATTAGAATTCCTATAGAAAA
ATTTCACCAAAATGTCATTTATTATCTAATTTCTTAGTCTTTGGACTCTG
TAACAATGGAGATTCTGCCAGATTCCAAAAAGTACAACTCTAGCTGAAAT
TGAAATGAGGATTTTCAATTACACAAATTTAAAAATCTATATTTTAAATG
AATATTGACTATAGAATCAGCTACTTTTCTGGTAGGTGGAAGTTTTCAAG
AAATAATTTCCTTGATTAGCTTTTTTTTTCTTTTCTGGATACTATCTATA
TAGTTCCCATTTCCTAAAACTGCAGATTGAGAACCGAATAACATTATATT
ACTTACATATTAGTAGATTGTATCTATGGAATACAGAACACAACTTAATT
ATTACCAATATGCGCTGCCGGCATTTAATAACAGTTTATCGATCCTAACC
TCTATATGGACCTTGAAGAATAATTTACCGCCTTATTATCAAATCCTTGG
AATTACCATTGCCCCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_i15.g1 MSMg01no395_i15.g1 CHROMAT_FILE:
MSMg01no395_i15.g1 PHD_FILE: MSMg01no395_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:25 2005
         (244 letters)



>mm_chr4_16992657_16993300
          Length = 644

 Score =  369 bits (191), Expect = e-107
 Identities = 224/243 (92%), Gaps = 15/243 (6%)
 Strand = Plus / Minus

                                                                       
Query: 17  tgaaagaacagtctttccaaacatgagtttgatctatatctctaccacttcctagcttga 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgaaagaacagtctttccaaacatgagtttgatctatatctctaccacttcctagcttga 317

                                                                       
Query: 77  gatccaagggcagtaaaatataatttagaggaaggatgcccagagttactacaatatttt 136
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 316 gatccaagggcagtaaaatataatttagaggaaggatgcccagagttactgcaatatttt 257

                                                                       
Query: 137 aaaagaacaactcccgagaacatctggtcaaaaaaaaaaa-----------gtgtgtaac 185
           |||||||||||||||||||| |||||||||||||||||||           || ||||||
Sbjct: 256 aaaagaacaactcccgagaatatctggtcaaaaaaaaaaaaaaaaaaaaaagtttgtaac 197

                                                                       
Query: 186 a---ccctgaaaaaa-tttgtctggattagaattcctatagaaaaatttcaccaaaatgt 241
           |   ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 196 aacaccctgaaaaaaatttgtctggattaaaattcctatagaaaaatttcaccaaaatgt 137

              
Query: 242 cat 244
           |||
Sbjct: 136 cat 134


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)