BAC Information

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BAC

Clone NameMSMg01-395L01
Chromosome4 (Build37)
Map Location 129,278,685 - 129,278,930
singlet/doubletsinglet
Overlap gene2510006D16Rik
Upstream geneTlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2
Downstream geneLOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395L01.T7 (MSMg01no395_l01.b1)MSMg01-395L01.TJ (MSMg01no395_l01.g1)
ACCAG496447AG496448
length790861
length of high quality
(start - end)
246 (66 - 311)269 (77 - 345)
definitionCHROMAT_FILE: MSMg01no395_l01.b1 PHD_FILE: MSMg01no395_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:36 2005CHROMAT_FILE: MSMg01no395_l01.g1 PHD_FILE: MSMg01no395_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATAATTTTTGCCTGCAATTGACTCTCACCTCTTAGAGGATCCGCGGA
ATTCCACAGTTCCCTAAATATAGTACCTCTCTCCTTCCCCCTAACCCTCA
GAGTAGGGCATATCTAGCTAGCTTACATAGGCAGCCATGGGCAGTTCTCG
ATAGCTTTCCTTATGTTCTACCCCAGGGCAAGTTGAGCCGAAAGAAAGCT
CAACTTGGTGATGATGACCTTAAGAGTAGTCCTGGAGCCTGGCAGTGGTG
GCGCCTTTAATCCCAGCACTCAGGAGTCAGATGCAGGCTGATCTCTGAAT
TCGAGGCTAGTGAGTTCATGTTATCCAGGGATACACAGAGAAATCCTGTC
TCCAAAAACAAACCATAAGCAAAAATAGTCATTGATTGAACATGTACCCT
GTACTAGGCCCAATGCTAAGCGTTCTATGTGCCTTACTTGAGCTCTCATA
CCAGCCCTATACTATGGCCATCACTAAATTTTTCATTCTTTTTGACGAAA
CAGACTCCCCTGATGATAATTGATTCTTCCCGGATCTTCTAGTGAGTATT
TACATGGGCTGCCCAATACTCCCGCCCCTTTTTTCCAATTTTTTTTTTTT
TTGATCCGCGCTTCCTTTTTTTCCCTTTATTTATTTTTCTTCCCCCAGCT
TTCATCTCTTCGTTATTTTCTTGTTAATTTATTACTTCCTGTATTCGCTA
TTTGAAATTTTTCCCCCATTTACCTCCTTTTTTTTTTTTAAAACATCTGT
TTCTTCTCCACATTTTTCTTCCCTCTTTTTTTTTTCACAC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAAACAGGGCTACATAGAG
AAACTCTGTCTCAAAAAACAAAAGGGGGGGGGGCTGGTGAAATGGCTCAG
TGGGTAAGAGCACCTGACTGCTCTTCCGAAAGTCCGAAGTTCAAATCCCA
GCAACCACATGGTGGCTCACAACCATCTGTAACATGATCTGACGCCCTCT
TCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATTAATAAAT
AAATAAAAAGGAGGAGGAGGAAGAATAGGGGAGAGGAAAGGAAGGAAGTC
CTTTTCTTCCTTCTTCCTCCTTTTTCCCCTTCTATTTCTCCTCCTTCTTC
CCTTATTTTTTCTTTTTCTCCCCTCCCCCCCTTTACCCTTTCTAATCTTC
TCTATTCCTCCTCCTTTTTTCTCTTTCTTTCTTTCCCCCCCTCTCTCTTT
TTCTTTCCTCTCCCCCCTATTTTCCTTTTTTTAACCGTATTTACTCTTTT
CTTTTTCTTCCTGCTCGCTTATTCTTCTTTCTTCTCCCCTTTTTTTTCTC
CTCCTTTTTCCTCTCTCTCCACTTTTCCTTCCCTCTTCTCACTCTTTCCC
TTTCTTTCCTCCCTGTGTTTACTTATATTTTACTCTTCACCCCCTCATAA
TCCTCTCTGTTTTTATTTTCCTCTCCCTTTTTTTCTTTTCTTTCTCTCTA
TACCTTTACCTTCCTCCTCTTCTCCCCCTCCCTTTTTTTCCCCCTCCCCT
TTATACTCCTCTTTTTTGCTTCTCGTCTTCTTCTCCTTTAATTTACCCTT
TTCTTTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_l01.b1 MSMg01no395_l01.b1 CHROMAT_FILE:
MSMg01no395_l01.b1 PHD_FILE: MSMg01no395_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:36 2005
         (246 letters)



>mm_chr4_129278561_129279206
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatatagtacctctctccttccccctaaccctcagagtagggcatatctagctagctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaatatagtacctctctccttccccctaaccctcagagtagggcatatctagctagctta 311

                                                                       
Query: 61  cataggcagccatgggcagttctcgatagctttccttatgttctaccccagggcaagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cataggcagccatgggcagttctcgatagctttccttatgttctaccccagggcaagttg 251

                                                                       
Query: 121 agccgaaagaaagctcaacttggtgatgatgaccttaagagtagtcctggagcctggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agccgaaagaaagctcaacttggtgatgatgaccttaagagtagtcctggagcctggcag 191

                                                                       
Query: 181 tggtggcgcctttaatcccagcactcaggagtcagatgcaggctgatctctgaattcgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tggtggcgcctttaatcccagcactcaggagtcagatgcaggctgatctctgaattcgag 131

                 
Query: 241 gctagt 246
           ||||||
Sbjct: 130 gctagt 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)