BAC Information

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BAC

Clone NameMSMg01-395L22
Chromosome4 (Build37)
Map Location 84,412,748 - 84,553,841
singlet/doubletdoublet
Overlap geneD530005L17Rik
Upstream gene4930473A06Rik, LOC668010, Bnc2, LOC100040660, LOC624465, LOC100040284
Downstream geneLOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395L22.T7 (MSMg01no395_l22.b1)MSMg01-395L22.TJ (MSMg01no395_l22.g1)
ACCAG496487AG496488
length794791
length of high quality
(start - end)		429 (45 - 473)445 (75 - 519)
definitionCHROMAT_FILE: MSMg01no395_l22.b1 PHD_FILE: MSMg01no395_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:41 2005CHROMAT_FILE: MSMg01no395_l22.g1 PHD_FILE: MSMg01no395_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,553,500 - 84,553,841)(84,412,748 - 84,413,190)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAACATTTTATACTTATCCTTTTAATATGTAATTTAAAACCAGTAA
ACTTCAGGATAGCTAAAGTAGAAAATACCAAACCTCCTGTTCCTGTAAGA
TAAAATAATAATAATTTAAATGTTATTCATAAACAAAGTAGCTCTAGAAC
TGCTCAAGAATCCTGTCTGAGCTGGAGAGACTGATCACGAGGTAACAGGG
CTTGCAGATCTTTCAGGAGATCTGAGTTTGATTCCCAGTACCCACTTCAG
ATGGCTCACAACTGCCTACAACTCCAGCTCCCCTGGTCTCCATAGGCAAC
TGAAAGTGCATGTTCACCACTCTCCCACCCTACTTTTCTACATACACATA
ATTAAGTGCTGAACTAAATCCTTTGAAGAGTTTAATTAAGAACATTGTAG
GAACTGTAGAGATAGGTGGTAGTTCAGTGGGTAAGCACTCTTGAAGAAGA
TCCAGTTCATTTTCCATCCACATGNCAGTTCACAACTGCTTATAACTCCA
GTTCCAGGAACTGAAACCCTCTTTCAACTCTGCAGGTCCCGCATGAAAAG
GGGCAACAAGTACATGACCTGCTTACCTGAGGATAACCAGTTTACTTGAA
AAAAATGGTCCAGTCCCTCCCCCCCCAAGAACAAAAAAAAGAGAACTCCT
TGAAAAGCTTTTTGAAATATAACCCCCCCTAAAAAAAAAAAATGGAAAAA
TTTTGTCCCCTCCCCCCATATTAAATTCGTCTCCATACCCCCCG

CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATAAAGGCAACTGCCAAGCCAAGA
GTGCTTGTGATTAGCATCCTCTGTGAACCACTTAGTGCAACGAGTGCTCC
TTCAAAGAACTGCAAATCGCAGACTAAGTCAGGCTCAGACTACATTCCGT
TTTCTTTTTTTCCCCTCTCATATGCTGTCGCTGCTGTCTTTTCTCAGTGC
CTGCTGTTTTCTGTTATTCCTGCTTTTCTATCGATTCTGGAGGCACGGGC
CTTTGACCTTAGAACAAATGCAAAGAAATATTCGTGGAGTAAAATGTTGT
GGAATAATAGGATGCCAGGACCATCTGACTGTAAGAAATGCAAGTTGCTC
CTCTGGTGGCCAAGATTTGATTCTCAGAGCTGGCTGAGCTGGCATGCAGA
GCCCTTAAAGCTAGCGGGGAAAGCCTGCATGCAAGCAAGCATGCATGCAA
GCAAGCACGCATGCCGAACCCAGTCTTGTTCTCTGTAAAAGCAGCTGTAT
GGGGAGTTTCCATCAGCGCCTGTATGTAAAGCTCTCTGTGCTCCACTATG
AATGGGGTAGGAGCTGGTTCAACCCTGAAGAAGCGCCATTGGATTTTATT
TTTAGAACCAAACTCCCCCCCATGGGGATTGGAAAAAAAATCCTCCATTA
AAATGCCGCCTTAAAAATCCAAACTTAATTTCCCTTTAACCTGAAGGTTA
TCTCCCTTTTTGAACGCCGGGGGGCCACAAAAATAAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_l22.b1 MSMg01no395_l22.b1 CHROMAT_FILE:
MSMg01no395_l22.b1 PHD_FILE: MSMg01no395_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:41 2005
         (429 letters)



>mm_chr4_84553013_84553841
          Length = 829

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 88  acctcctgttcctgtaagataaaataataataatttaaatgttattcataaacaaagtag 147
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 829 acctcatgttcctgtaagataaaataataataatttaaatgctattcataaacaaagtag 770

                                                                       
Query: 148 ctctagaactgctcaagaatcctgtctgagctggagagactgatcacgaggtaacagggc 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ctctagaactgctcaagaatcctgtctgagctggagagactgatcacgaggtaacagggc 710

                                                                       
Query: 208 ttgcagatctttcaggagatctgagtttgattcccagtacccacttcagatggctcacaa 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttgcagatctttcaggagatctgagtttgattcccagtacccacttcagatggctcacaa 650

                                                                       
Query: 268 ctgcctacaactccagctcccctggtctccataggcaactgaaagtgcatgttcaccact 327
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 649 ctgcctacaactccagctcccctggtctccataggcaactgaaattgcatgttcaccact 590

                                                                       
Query: 328 ctcccaccctacttttctacatacacataattaagtgctgaactaaatcctttgaagagt 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ctcccaccctacttttctacatacacataattaagtgctgaactaaatcctttgaagagt 530

                                                     
Query: 388 ttaattaagaacattgtaggaactgtagagataggtggtagt 429
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttaattaagaacattgtaggaactgtagagataggtggtagt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no395_l22.g1 MSMg01no395_l22.g1 CHROMAT_FILE:
MSMg01no395_l22.g1 PHD_FILE: MSMg01no395_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:41 2005
         (445 letters)



>mm_chr4_84412548_84413392
          Length = 845

 Score =  857 bits (443), Expect = 0.0
 Identities = 443/443 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccataaaggcaactgccaagccaagagtgcttgtgattagcatcctctgtgaaccactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccataaaggcaactgccaagccaagagtgcttgtgattagcatcctctgtgaaccactta 260

                                                                       
Query: 61  gtgcaacgagtgctccttcaaagaactgcaaatcgcagactaagtcaggctcagactaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaacgagtgctccttcaaagaactgcaaatcgcagactaagtcaggctcagactaca 320

                                                                       
Query: 121 ttccgttttctttttttcccctctcatatgctgtcgctgctgtcttttctcagtgcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccgttttctttttttcccctctcatatgctgtcgctgctgtcttttctcagtgcctgc 380

                                                                       
Query: 181 tgttttctgttattcctgcttttctatcgattctggaggcacgggcctttgaccttagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttctgttattcctgcttttctatcgattctggaggcacgggcctttgaccttagaa 440

                                                                       
Query: 241 caaatgcaaagaaatattcgtggagtaaaatgttgtggaataataggatgccaggaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatgcaaagaaatattcgtggagtaaaatgttgtggaataataggatgccaggaccat 500

                                                                       
Query: 301 ctgactgtaagaaatgcaagttgctcctctggtggccaagatttgattctcagagctggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgactgtaagaaatgcaagttgctcctctggtggccaagatttgattctcagagctggc 560

                                                                       
Query: 361 tgagctggcatgcagagcccttaaagctagcggggaaagcctgcatgcaagcaagcatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagctggcatgcagagcccttaaagctagcggggaaagcctgcatgcaagcaagcatgc 620

                                  
Query: 421 atgcaagcaagcacgcatgccga 443
           |||||||||||||||||||||||
Sbjct: 621 atgcaagcaagcacgcatgccga 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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