Query= MSMg01no395_o01.b1 MSMg01no395_o01.b1 CHROMAT_FILE:
MSMg01no395_o01.b1 PHD_FILE: MSMg01no395_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:51 2005
(495 letters)
>mm_chr4_31200881_31201775
Length = 895
Score = 891 bits (461), Expect = 0.0
Identities = 484/493 (98%), Gaps = 4/493 (0%)
Strand = Plus / Plus
Query: 5 gaattcagactgg--ttccttcattgcccttagatctgttggcactcagatgccagattg 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagactggcatt--ttcattgcccttagatctgttggcactcagatgccagattg 262
Query: 63 ctgttacagataagagcacaattaattatacatcattgggtccaaaattctagcaccgtg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgttacagataagagcacaattaattatacatcattgggtccaaaattctagcaccgtg 322
Query: 123 ctaccatatacagtgtgaagtaagtaaattggaggacatctccagtcctgattttctgtg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctaccatatacagtgtgaagtaagtaaattggaggacatctccagtcctgattttctgtg 382
Query: 183 aaaggttaataatatttgtatctactacatgcatttcttatgaagatgaaatgaaaccta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaggttaataatatttgtatctactacatgcatttcttatgaagatgaaatgaaaccta 442
Query: 243 gatgataaaatgtaatctttgagacatgtagtttgttttctcctgccacctccttctcca 302
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 gatgataaaatgtaatctttgagacatgtagtttggattctcctgccacctccttctcca 502
Query: 303 ccctcatcagacctgcaaattatgagccatacagataagcttctgatccttttccaatcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ccctcatcagacctgcaaattatgagccatacagataagcttctgatccttttccaatcc 562
Query: 363 ttcctgtcctgttctgcgaccagttgggaccatgccaagctgctctgagcagcctgctat 422
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcctgtcctgttctgtgagcagttgggaccatgccaagctgctctgagcagcctgctat 622
Query: 423 ccagtcttgatcttcattctcctgccacctctcctccgaccttcatcagacctgtggctc 482
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 ccagtcttgatcttcattctcctgccacctctcctccgacctttatcagacctgtggctc 682
Query: 483 ctgaaccatacaa 495
|||||||||||||
Sbjct: 683 ctgaaccatacaa 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_o01.g1 MSMg01no395_o01.g1 CHROMAT_FILE:
MSMg01no395_o01.g1 PHD_FILE: MSMg01no395_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:51 2005
(344 letters)
>mm_chr4_31381733_31382474
Length = 742
Score = 638 bits (330), Expect = 0.0
Identities = 340/344 (98%), Gaps = 2/344 (0%)
Strand = Plus / Minus
Query: 1 ttgacctacttctgaattcttgtttttttttttttccagaaagttcagtcttcggtgatt 60
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 542 ttgacctacttctgaattcttg--tttttttttttccagagagttcagtcttcggtgatt 485
Query: 61 atcttagccacagcagctactcactccaataactgctcaatgatgaaatgtgtctggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atcttagccacagcagctactcactccaataactgctcaatgatgaaatgtgtctggagc 425
Query: 121 cagccaaacacactccagccacatggctactttcactttctagaaccgcatcaattagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagccaaacacactccagccacatggctactttcactttctagaaccgcatcaattagag 365
Query: 181 aaaaccgggacatgatgagagttttaaaacttaggtgatgtgtttgcactttaatttgtg 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 364 aaaaccgggacatgatgagagttttaaaacttaggtgatgtgtttgcgctttaatttgtg 305
Query: 241 tttgtatttttggggaagaccgtcatgcaatttccccattgtctcctcattagcatttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttgtatttttggggaagaccgtcatgcaatttccccattgtctcctcattagcatttct 245
Query: 301 tcaaattagatttttttctaccagactaccaaaatatgacagca 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcaaattagatttttttctaccagactaccaaaatatgacagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 742
Length adjustment: 9
Effective length of query: 335
Effective length of database: 733
Effective search space: 245555
Effective search space used: 245555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
