BAC Information

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BAC

Clone NameMSMg01-396B10
Chromosome4 (Build37)
Map Location 118,983,745 - 119,195,327
singlet/doubletdoublet
Overlap genePpih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052
Upstream geneHyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1
Downstream geneAA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396B10.T7 (MSMg01no396_b10.b1)MSMg01-396B10.TJ (MSMg01no396_b10.g1)
ACCAG496750AG496751
length767770
length of high quality
(start - end)		466 (36 - 501)437 (66 - 502)
definitionCHROMAT_FILE: MSMg01no396_b10.b1 PHD_FILE: MSMg01no396_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:08 2005CHROMAT_FILE: MSMg01no396_b10.g1 PHD_FILE: MSMg01no396_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(119,195,025 - 119,195,327)(118,983,745 - 118,984,181)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGTT
GCTCTTATAAATAATTGTCACAAGCATAGTAGCTTGAAATAACACAAATT
TAGTATCTAATAATCCTGAAGGTTAGAAGTTGGAAATCAGTCCCCCTGTT
CCATGGGCCAGGTGTCACATGGCCAGGTTCTTCTGGAGTCCTAGGAGAGA
CTCCGTCTCCTTGCCTTTAGCATCTACTAGAAGCTGCAGGCGTGCTTTGG
CTCATGCCCACAGCCATGTTCAGTGCCAGCAATGGGCAGGTCCCTGATAT
GTCTCACTCTAAACATAACTTCTGTCATTTCCCTTTCACTCCTGTCCCTC
AATCACAAGGAGCCCACCCAGACAATCCAGGATCATTTCCCACCCCAATG
CCAGTGGACGTGTGTGTGAGTGTGCATGCATGTTGGTATGGATACATGTG
TTGATCGGGACTCATCCCCCATTGTTCTTCCATTGTACTCAATAGATAGA
CTCTCTCCATCATACCCACAGCTCAAGGTACTGCAAGCATCGCTGGGCTT
CTTGCTCTGGAGATTCCTGGCTCTGTCTTTCCAGGTTGCTGCTTTGCTCA
CCAATTGTCTGGGATCCTGTGAGCCCAAATCTTGCCCCTCTTAAAGCGTG
TTATGAAATACTCTAACCTTTGATTCTCTTTCTCTTCCCCACCTTTCTTC
CTCATTTTTACCTTCCCCCTTTGTATGTCAACGGGGTTCCCACAATTGCA
TTCCCACTTCTTATTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTAGGTAGAGAGAAGTGTTGGAGCCAAGACTTAG
GGTGCGAAGAGCAGGAGGCACACACTTGTAGGACCTCCTTAGAAAAGAGC
CAGGAGCTTGATGACACCGGACCAGAGGAGACAGTGGCAGAAGGGGTCAC
GGAGGGGCAGGTAGGGTACAGGTCACAAGGATTCCAAATGCAATGCCAAG
AAGTGGAATTTTATTCAGTGGGCATCAGGATCAGAGCCAAAGTCCCAGTA
AGTGCTGGGCAGGTTAATGAATGGGTCCAAGCTTGAACTCTCTTTCCCAA
AGGAGCCTGGAACTGTGAACAGGGACAGATGGTCTAGAAAACTGGCTCCT
CGGTAATAAGCATGAGACCCCTGACCACAAAGACTCAGGACACCCATCAG
GACCTACCTCGATCTTCCTCATCACTAGAAGTCCGTCAATGATTTTTCCT
GCAGAAGAACATTAAGTAAGGCTCCCTTCTTGGTGTGATCACAGTGTTTT
CCAGCTCCCAGGGAACATGTTCCCTTAGCATCTCTTCAGATCCCCCTCCT
ACGCAAGTAGACTAAGGCTTGGTGAGGGAGTTTACTTCCCCAAAGTCTCG
TTCAATCTTTTCTTAGAATCCGTTTCGGCTTTGTATATTATGTGCCCCCA
AATCCCCATCTCCCTTGGGTTTTTCCCGGGGCTTTATTCTTTTTTTTTCT
CCCGTATTTCCTTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_b10.b1 MSMg01no396_b10.b1 CHROMAT_FILE:
MSMg01no396_b10.b1 PHD_FILE: MSMg01no396_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:08 2005
         (466 letters)



>mm_chr4_119194462_119195327
          Length = 866

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 164 gactccgtctccttgcctttagcatctactagaagctgcaggcgtgctttggctcatgcc 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gactccgtctccttgcctttagcatctactagaagctgcaggcgtgctttggctcatgcc 807

                                                                       
Query: 224 cacagccatgttcagtgccagcaatgggcaggtccctgatatgtctcactctaaacataa 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cacagccatgttcagtgccagcaatgggcaggtccctgatatgtctcactctaaacataa 747

                                                                       
Query: 284 cttctgtcatttccctttcactcctgtccctcaatcacaaggagcccacccagacaatcc 343
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 746 cttctgtcatttccctttcactcctgtccctcaatcacaaggagcccactcagacaatcc 687

                                                                       
Query: 344 aggatcatttcccaccccaatgccagtggacgtgtgtgtgagtgtgcatgcatgttggta 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aggatcatttcccaccccaatgccagtggacgtgtgtgtgagtgtgcatgcatgttggta 627

                                                                       
Query: 404 tggatacatgtgttgatcgggactcatcccccattgttcttccattgtactcaatagata 463
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 626 tggatacatgtgttgatcgggactcatccctcattgttcttccattgtactcaatagata 567

              
Query: 464 gac 466
           |||
Sbjct: 566 gac 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_b10.g1 MSMg01no396_b10.g1 CHROMAT_FILE:
MSMg01no396_b10.g1 PHD_FILE: MSMg01no396_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:08 2005
         (437 letters)



>mm_chr4_118983545_118984381
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaggtagagagaagtgttggagccaagacttagggtgcgaagagcaggaggcacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaggtagagagaagtgttggagccaagacttagggtgcgaagagcaggaggcacacac 260

                                                                       
Query: 61  ttgtaggacctccttagaaaagagccaggagcttgatgacaccggaccagaggagacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaggacctccttagaaaagagccaggagcttgatgacaccggaccagaggagacagt 320

                                                                       
Query: 121 ggcagaaggggtcacggaggggcaggtagggtacaggtcacaaggattccaaatgcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagaaggggtcacggaggggcaggtagggtacaggtcacaaggattccaaatgcaatg 380

                                                                       
Query: 181 ccaagaagtggaattttattcagtgggcatcaggatcagagccaaagtcccagtaagtgc 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ccaagaagtggaattttattcagtgggcatcaggatcagagccaaaatcccagtaagtgc 440

                                                                       
Query: 241 tgggcaggttaatgaatgggtccaagcttgaactctctttcccaaaggagcctggaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggcaggttaatgaatgggtccaagcttgaactctctttcccaaaggagcctggaactg 500

                                                                       
Query: 301 tgaacagggacagatggtctagaaaactggctcctcggtaataagcatgagacccctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaacagggacagatggtctagaaaactggctcctcggtaataagcatgagacccctgac 560

                                                                       
Query: 361 cacaaagactcaggacacccatcaggacctacctcgatcttcctcatcactagaagtccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaaagactcaggacacccatcaggacctacctcgatcttcctcatcactagaagtccg 620

                            
Query: 421 tcaatgatttttcctgc 437
           |||||||||||||||||
Sbjct: 621 tcaatgatttttcctgc 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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