BAC Information

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BAC

Clone NameMSMg01-396B21
Chromosome4 (Build37)
Map Location 116,605,752 - 116,606,204
singlet/doubletsinglet
Overlap geneZswim5
Upstream geneDmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048
Downstream geneUrod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396B21.T7 (MSMg01no396_b21.b1)MSMg01-396B21.TJ (MSMg01no396_b21.g1)
ACCAG496772AG496773
length788789
length of high quality
(start - end)		453 (62 - 514)390 (66 - 455)
definitionCHROMAT_FILE: MSMg01no396_b21.b1 PHD_FILE: MSMg01no396_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:10 2005CHROMAT_FILE: MSMg01no396_b21.g1 PHD_FILE: MSMg01no396_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGACGATCCGCGGAATTCTATA
AGTGTTTCTTAATGAAAAATTCTGGTAAAGCACTCGGAAGACCAGACTGC
TGGTAGAGCACAGATAATAATGTCTAGGCTCTCAGTTTTCCAGATGGTAG
TAGGTTCTGGAGAATTAGGTTAAAGGTCATTGCATTGCATTCTGGCAAAG
ATTTTATCTACATGCCCGAGACTCTGTGAGAAGCTAAAATTAAAGGTAAC
ATATTAATTTATCTGGTAGAAGAAATTTCTAGGTTCTGTATCATTTTTCT
GTGACCTGGCTGTTGCTGGCTCTTTTAGTAAGATTTATAGTGAGACTATC
AGCCAAATAGATTTGAAAAACTTGTAGTTTGTTTAAAAAAGAATGTATGA
AGTTGAGACCAGGGGTGGGATTGTTGAAGAGTGTGTCCTTACAGACAAGC
CAAGTACCCTATATCAGACTAACAAGAAAGAAGCCTTGAGAGCATCTTGG
GAATTGGTTCTACCCATCCCTGTCTAGATCAAAGATGTAAAGATGGGCAT
TCCCTTCTAAGAGACTACTTTGAAAAGGGACCTGCTCCCCCCTGGGATTC
TTTTGAAAGTGTTTTTTCAAGGTTTGACTGCCCCCAACATTGTGGGCCAC
CCAAAATTCCCTTTGGGGGTGGATTCTTGGTTTCCGCGGCGTGGGGCGTT
TTTCCGCTTGTAAATAAAAAAAGGTCTGGAAACCTCAAACTTTTTTTGTT
TCAAATTCAATAAAAAGGCCCGGTACGCCTTATAATGG

GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGGTAATGAAGT
GTTCCCACAACACAGACTGTTGAGAAGGATTCAACTGCATGAATTCAGAA
CTCTTCAGCTGGGGAACAGGGGTACCAGTGAGTACAGCTTTACAAGGTAA
GTCTGGTCTTGAACTTTCTAAGGAAATTCAAGACAGTCTATCAGAAGTAA
AGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTTTTCTAGTG
TTAGGAGCCTTTTTGTTCTTTTTCACATGTTATCAAGTGATTAAGATAGG
GCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGG
GAGAGAGAGTAGGAGCAAAGAGGAAATATGGTACACAAAATAAGTATACA
GGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGTTAAGGTCAGGTAAGAA
TACCTGGGTAGAGATTAAAAGGAGGTTAAAGAATAAGCTATTCACTTAGA
TCCCTTCTATAAGCCGCTTCCTTGTTAGTTTCGAACCAAATGACCAATCC
CCTCCTTAAAAAATACACGGTAGTTAAAAAAAATTCCTTCCTTTAAATAA
AAAATTTCCCCCCTAATAAAATTTTTTTTCCTTCGCTTTTTAAAATACCT
CACATTTTTTCGCTTATGTACCTCTCNTTTTTTTTCTTCTTCTCTACCTT
TTCTTCATAGTTTATTTTTTCCTCTTTTTTTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_b21.b1 MSMg01no396_b21.b1 CHROMAT_FILE:
MSMg01no396_b21.b1 PHD_FILE: MSMg01no396_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:10 2005
         (453 letters)



>mm_chr4_116605552_116606404
          Length = 853

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaaaattctggtaaagcactcggaagaccagactgctggtagagcacagataataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaaaattctggtaaagcactcggaagaccagactgctggtagagcacagataataat 260

                                                                       
Query: 61  gtctaggctctcagttttccagatggtagtaggttctggagaattaggttaaaggtcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctaggctctcagttttccagatggtagtaggttctggagaattaggttaaaggtcatt 320

                                                                       
Query: 121 gcattgcattctggcaaagattttatctacatgcccgagactctgtgagaagctaaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattgcattctggcaaagattttatctacatgcccgagactctgtgagaagctaaaatt 380

                                                                       
Query: 181 aaaggtaacatattaatttatctggtagaagaaatttctaggttctgtatcatttttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggtaacatattaatttatctggtagaagaaatttctaggttctgtatcatttttctg 440

                                                                       
Query: 241 tgacctggctgttgctggctcttttagtaagatttatagtgagactatcagccaaataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgacctggctgttgctggctcttttagtaagatttatagtgagactatcagccaaataga 500

                                                                       
Query: 301 tttgaaaaacttgtagtttgtttaaaaaagaatgtatgaagttgagaccaggggtgggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tttgaaaaacttgtagtttgtttaaaaaagaatgtatgaagttgagaccagtggtgggat 560

                                                                       
Query: 361 tgttgaagagtgtgtccttacagacaagccaagtaccctatatcagactaacaagaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttgaagagtgtgtccttacagacaagccaagtaccctatatcagactaacaagaaaga 620

                                            
Query: 421 agccttgagagcatcttgggaattggttctacc 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 agccttgagagcatcttgggaattggttctacc 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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