Query= MSMg01no396_g18.b1 MSMg01no396_g18.b1 CHROMAT_FILE:
MSMg01no396_g18.b1 PHD_FILE: MSMg01no396_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:32 2005
(454 letters)
>mm_chr4_17629520_17630369
Length = 850
Score = 799 bits (413), Expect = 0.0
Identities = 440/451 (97%), Gaps = 4/451 (0%)
Strand = Plus / Plus
Query: 4 ggaattccagaacgtgcctatagaactgctgaattgttaagacagagtacttttagagca 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagaacgtgggtatagaactgctgaattgttaagacagagtacttttagagca 263
Query: 64 tgggttttgcactaagaagtaaatattacccatttaaggacaaagtgggaaagttatagt 123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 tgggttttgcactaagaagtaaatattacccatttaaggacaaagtgggaaacttatagt 323
Query: 124 gtaagatgtgtatttgaatattaactttaaaggtaaacgtatggtaaaaaagcttgactg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtaagatgtgtatttgaatattaactttaaaggtaaacgtatggtaaaaaagcttgactg 383
Query: 184 ccaattgaattgaattgaaggattcctagaaatttattaaggtacaattttaggtatgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaattgaattgaattgaaggattcctagaaatttattaaggtacaattttaggtatgtt 443
Query: 244 tataaggacattttcagaaatattgaaagaaaatgtaatctattctcagtatgggtgggt 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 tataaggacattttcagaaatattgaaagaaaatggaatctattctcagtatgggtgg-- 501
Query: 304 ggtactatatcctctgccattttatggctaggataagtacataatgaaagtgtttataat 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 502 --tactatatcctctgccattttatggctagtataagtacataatgaaagtgtttataat 559
Query: 364 tattattattgctcttctccatttttcagctgttgtgaagtgagctaccctataccttat 423
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 tattattattgttcttctccatttttcagctgttgtgaagtgagctatcctataccttat 619
Query: 424 gctctaccaccatgatggtgtccttaaccag 454
|||||||||||||||||||||||||||||||
Sbjct: 620 gctctaccaccatgatggtgtccttaaccag 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 850
Length adjustment: 10
Effective length of query: 444
Effective length of database: 840
Effective search space: 372960
Effective search space used: 372960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_g18.g1 MSMg01no396_g18.g1 CHROMAT_FILE:
MSMg01no396_g18.g1 PHD_FILE: MSMg01no396_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:32 2005
(448 letters)
>mm_chr4_17788540_17789387
Length = 848
Score = 851 bits (440), Expect = 0.0
Identities = 446/448 (99%)
Strand = Plus / Minus
Query: 1 ttctggtgatatgcactgagtttgattatttcagacatgtgctgaggcacgtgactcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 648 ttctggtgatatgcactgagtttgattatttcagacatgtgctgaggcatgtgactcatg 589
Query: 61 tcacatcaagtgcacacaatttggagacatgaaatgccattaatgacagcatccagcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tcacatcaagtgcacacaatttggagacatgaaatgccattaatgacagcatccagcttc 529
Query: 121 ccctagaaggatatttctctgccttctcttgtctatagctaaagcaaatagttgaaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ccctagaaggatatttctctgccttctcttgtctatagctaaagcaaatagttgaaattt 469
Query: 181 tcattcctttaaatagcttgcatccttccaataattatctctcctgaaaacatagcttat 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 468 tcattcctttaaatagcttgcattcttccaataattatctctcctgaaaacatagcttat 409
Query: 241 tttgcttatccatatctcacttaagtgactagactaaaacacatttctaaaacctgaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tttgcttatccatatctcacttaagtgactagactaaaacacatttctaaaacctgaatt 349
Query: 301 gcatttgtgagtaggttataccttaattaaatgttggtactctctaatgtattagtgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcatttgtgagtaggttataccttaattaaatgttggtactctctaatgtattagtgaat 289
Query: 361 gtcttcttatttacatacttctcccatataataatcatttttataagttataagcttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtcttcttatttacatacttctcccatataataatcatttttataagttataagcttttc 229
Query: 421 aagttgaaagactactgaatctcctgtt 448
||||||||||||||||||||||||||||
Sbjct: 228 aagttgaaagactactgaatctcctgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
