BAC Information

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BAC

Clone NameMSMg01-396G23
Chromosome4 (Build37)
Map Location 63,752,961 - 63,753,271
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396G23.T7 (MSMg01no396_g23.b1)MSMg01-396G23.TJ (MSMg01no396_g23.g1)
ACCAG497013AG497014
length776772
length of high quality
(start - end)		462 (65 - 526)509 (63 - 571)
definitionCHROMAT_FILE: MSMg01no396_g23.b1 PHD_FILE: MSMg01no396_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:33 2005CHROMAT_FILE: MSMg01no396_g23.g1 PHD_FILE: MSMg01no396_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTT
CATTCCTGAGAACCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGTACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTCCCCCTGTGTCTATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAAGTATGGATCAATTCGCATTCTTCTACA
CGATAACAACCAGTTGTGCCAGCATCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTCACCATAGGTG
TGTGGGTTCTTTTTTGGGCCTTCAATTCTATTCCATTGGGCTACTTGTCT
GGCTCTATAGCAGTACCATGCAGTTTTGAACACAATTGCTCTGTAAAAAA
GCTTTTTGTTCGGCATGGGGATTCTCCCCCAGGTTCTTTTTTTCCTTGAA
AAAATTTTTGGGTTCCTCAGTTTTTTGGTTTTCCCAAGAATTCGCCATTT
GCTCTTTTATTTTCTTTTCAAATTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGTATCTCTCATTGTCTCAGACAGATGGCAGGATGTTA
GTAGACTGCCAGGAGGCTACAATGAATCCCCTGAATGTCTTAGTTCACTC
AAGTTGCTGAAACAAAAGTTGGTTTAATATGCAACAAACATTACATTACT
AAGGTGTCCGAGATGAAAGACTCTAGGATCCAGTATCTGATGAGCAATCC
TTTCTTGTTTACACATGACCATTCCTTCATTGCCTTCACATACCAGCAGA
TGAAAGAGGAAACTCTCTCTCTCCAGTCTTCAATGAGGGCACTAATCCAT
TAATATGGGCTCCACTCTCATGACTGCATTGGGATCATTAAATAATTTTC
AAAGGTCTCTCTTCCTAATAACCCTACCATTGGCATGGATAGGACATTCA
CATACAAATTGTCTGGCTGAAGGAAACAAAGACACAGATATAGAACTGAG
TCAAGGACCTGTCAGGCTACATAGGGAAATAACACAGGAGATATGACAAG
GCAAGAACATAGGTCCCGGCTCATTCTAAAGCCCTGTGGGCAAGAACCAA
ATAAGCAATTCTCAGGGCTACAGCAAAGTTTGGAGACTTTCTCTTTTTAA
TATTTAATTAAAAATTTTCTATTGTTGATTATAATGTGCGCGCGGAAATA
TAAATAATGGGTGGCGCGTCCTCCCTCCACCTTCTTTCATTCTCTTTTTT
TTTCTATTTTTACTTTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_g23.g1 MSMg01no396_g23.g1 CHROMAT_FILE:
MSMg01no396_g23.g1 PHD_FILE: MSMg01no396_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:33 2005
         (509 letters)



>mm_chr4_63752363_63753271
          Length = 909

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 199 acacatgaccattccttcattgccttcacataccagcagatgaaagaggaaactctctct 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 acacatgaccattccttcattgccttcacataccagcagatgaaagaggaaactctctct 850

                                                                       
Query: 259 ctccagtcttcaatgagggcactaatccattaatatgggctccactctcatgactgcatt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ctccagtcttcaatgagggcactaatccattaatatgggctccactctcatgactgcatt 790

                                                                       
Query: 319 gggatcattaaataattttcaaaggtctctcttcctaataaccctaccattggcatggat 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gggatcattaaataattttcaaaggtctctcttcctaataaccctaccattggcatggat 730

                                                                       
Query: 379 aggacattcacatacaaattgtctggctgaaggaaacaaagacacagatatagaactgag 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aggacattcacatacaaattgtctggctgaaggaaacaaagacacagatatagaactgag 670

                                                                       
Query: 439 tcaaggacctgtcaggctacatagggaaataacacaggagatatgacaaggcaagaacat 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcaaggacctgtcaggctacatagggaaataacacaggagatatgacaaggcaagaacat 610

                      
Query: 499 aggtcccggct 509
           |||||||||||
Sbjct: 609 aggtcccggct 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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