BAC Information

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BAC

Clone NameMSMg01-396I03
Chromosome4 (Build37)
Map Location 17,131,744 - 17,131,922
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneLOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396I03.T7 (MSMg01no396_i03.b1)MSMg01-396I03.TJ (MSMg01no396_i03.g1)
ACCAG497069AG497070
length740731
length of high quality
(start - end)		666 (39 - 704)376 (65 - 440)
definitionCHROMAT_FILE: MSMg01no396_i03.b1 PHD_FILE: MSMg01no396_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:39 2005CHROMAT_FILE: MSMg01no396_i03.g1 PHD_FILE: MSMg01no396_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
CAATGATATTCCATTAATTCTTAAAGGAGGAACATAAACAATTTTGCTAT
GCTTATAATTATAATTAAAAATTACATTTTATTCAAAATTCAGTTTTGAA
TTAAGTATCTTAAGAAACACTATCATGAGATAGATTAAATTAAGTTCCCT
TGTTCAATGTCTGGGTTGGAGTACATCATCAGTCAGCCCATTACCTAGTT
TCATGCCCTTTGGGAATCTACAACAAAGTGGTCTTCTTTTGACCAACGCA
TAATTTTTCAAGATTTTGAAGGGAATAAGACAAATAGAAGCAAGTAAATT
ATATTATAAGTAAATTGATTAATTACAAATGGTTAAAGAAATATTCCGAG
AAATACCACAGAATGTTCCAGCTCTAAATCAAAACAGTGCGGTTTTGACC
CCCTTTTCTTCTCGGGAGGGAGAGGCCCAATTTGGAGATCAAGACAATAG
AGTTGTCTTAATAGCTCCCAACAATTGTATATTGTTTGTTAAATGGAATG
TAATTTATTAGCAAATGCCTCTGAAGGGAAGTTTAGTTCAAATATTTGCT
CTTACACAATGATCTTTAAAGTTCTGGGGAGTAGCTATTGCTCCAGAANA
TATTCAGAGGCAATATCTTTTTAATATTTATGGTTTTAGTTATCCTAAAA
AATTGTGGTACAGAAAATTTAAGGGAAAAAAATATTTGCN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGATGGGAATTGCATTGATTCTATAGATTGCTTTTG
AAATAAGAGCCATTTTCATTGATTGAAACCTACTGATTCATGGGCATGGG
AGATCTTTAGATCTTTCCCTCATCTCAGGTCTTCTTCAGTTTTTTCTTTC
AAGGACATGAAGAATTGTCATACAGACTGATCTTTCACTTGCTTGGTTTA
GAGTTACACCAAGATATTTTATGTTATTGTGGCTAGAGTGAAGTGTCTTG
TTTCCCTAATTTCTTTCTTACCCTGTTTATAATTTGGATAAAAGAAAGCT
ACTGGTAGTTTTAGTTAATTTTATATTCACCAACTTTGCTGTTTTTTGTT
TTGTTTTGTTTGTTTGTTTGTTTGTTTTTGTTGTTGNTTTTTTTNNNNNN
NTNNNTNTTTNTNTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTNN
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTNTTCCTTTTT
TTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
NTTTTTTTTTTTNTTTTTTTTTTTNTTTNNNTTNNTTTTTTTTTTTTTNT
TTTTNNTNNNTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTNNNTTTTTNTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_i03.b1 MSMg01no396_i03.b1 CHROMAT_FILE:
MSMg01no396_i03.b1 PHD_FILE: MSMg01no396_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:39 2005
         (666 letters)



>mm_chr4_17131441_17132506
          Length = 1066

 Score =  284 bits (147), Expect = 1e-80
 Identities = 171/179 (95%)
 Strand = Plus / Minus

                                                                       
Query: 104 agttttgaattaagtatcttaagaaacactatcatgagatagattaaattaagttccctt 163
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 482 agttttgaattaagtatcttaagaaacactatcatgagatagactaaactaagttccctt 423

                                                                       
Query: 164 gttcaatgtctgggttggagtacatcatcagtcagcccattacctagtttcatgcccttt 223
           ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct: 422 gttcaatgtctgggttggagtacatcatcggtcagcccattaactagcttcatgcccttt 363

                                                                      
Query: 224 gggaatctacaacaaagtggtcttcttttgaccaacgcataatttttcaagattttgaa 282
           ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 362 gggaatctacaacaaagtggtcttctttttactaaggcataatttttcaagattttgaa 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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