BAC Information

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BAC

Clone NameMSMg01-396I10
Chromosome4 (Build37)
Map Location 39,478,210 - 39,478,402
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665520, LOC100039487, 1700009N14Rik
Downstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396I10.T7 (MSMg01no396_i10.b1)MSMg01-396I10.TJ (MSMg01no396_i10.g1)
ACCAG497083AG497084
length753771
length of high quality
(start - end)
195 (113 - 307)245 (63 - 307)
definitionCHROMAT_FILE: MSMg01no396_i10.b1 PHD_FILE: MSMg01no396_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:40 2005CHROMAT_FILE: MSMg01no396_i10.g1 PHD_FILE: MSMg01no396_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCGCTAAAAGAANACTANATACCTTACTCCGGNGGAANNNCTACCAGT
TTCGAAAACCATCTAGAACTCATATTAATCCATATTGCTCATTTATCTTG
TGTGTATCACCCATTTTGATTACAAACGGTGCTCCTTCATTATATGGCTA
GCACTTAGCCACTTGGCTTCCTCTTCCTTTGGCACATTCCCAAGCAAGCA
TTATGACTGGTCTCACGATAGTCTCTCGGTATAACATTTTTATTCAACTT
TTTTAAACCTTGGGTTTAGGTGTGTTCTGAACCACTCAGCACTTGGCTAC
AAAGTTTGCTAGGTTAGGGACCATATCCATATTCATCATTGCTGCATCCC
CGACGCCTAGGACATGTCTGGTACATGGTAACAATCTAATAATTAATGAA
ACCCCACATATCGGTAAGAAGATGGGAGGTGGAACATTCTGAACTATGTT
GGTACCAGAGTGTAGAAAGCTAGTGGAGATGCTAAAGACCAGTACTGCAA
AATGGGTGACAATCATTTTGTGATTCATCTACAGAAGGTTTTTCTTATCA
TCTTTCCCCTCCAACCAGTGACATTTGAGATAGTGGTTCTCCCCCACAAG
TGGGGAAACCTGTCCTTGAANAAAACGCTGGAAACCACGTTCATTATTTT
TATCCGGAATCCCACCCCCCTACCGCCGTAAGCATTTTGCTTTTTCTGAC
CATGGGCCACTTTGTTATAAGAAGAAAATTTTTCCCCCCCCCCTTGGAGT
GCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGTTTAGCTCTGTACTCTATTTAATAGGGTTATTTG
GTGTTGCGGCCGGTCCGCAGCTCGCAATGAACGGTTCAAATGAGATGGCA
ACTTGGGCTGAAAGAGAAAAACTAGACGGGCAGAAGAAAGAACGAAGCCA
AGTCAAAAGTCACTCTGATCAAAGCTCAATTTTTACTGTTGCTACACTCA
GTTATGAAGGAAGGGGGAGGGGACCCGATTCCCGCCAAATAATCTCAGAA
TCCAGTATTTTTTTGAGCACGTGATGGCTTCAGAACAGCAAGGCGGCAGG
TTCCAGCAGTGGGCGTGGCAGAACGAATGATCAGGAAGCTCCACCCCAGA
GCAAGCAGGTTTCAGGTTGGGGGAGGGGAGACTACTATTTGTGTCTCTGG
AGTCTAACTTCTTGAGTTCTTCTGATATATTGGATATTAACCCTCTATCA
GATGCAGTATTGCTACTACTTACTCTTATACCTACTCCACTTCAAGACCC
GTTTTGATTTTTTATCACCCATGCACTCTTACACCTTATTATCCACGTTT
TGCCACCCCTTTTCATTGTACCGGTGTTAATTTCCAGCTTGTCTCAATTT
CAATCGATTTGTTTTCCCCCCTTTGTTCCCCTCTTCCTTCCCTATCTTCT
TTTTCTTCTCTCCTGTCTTTAACCCTCCTCTCCATGCACTTCCCTCTCTC
CTTTCTCTCTTTTTTTACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_i10.b1 MSMg01no396_i10.b1 CHROMAT_FILE:
MSMg01no396_i10.b1 PHD_FILE: MSMg01no396_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:40 2005
         (195 letters)



>mm_chr4_39478010_39478604
          Length = 595

 Score =  350 bits (181), Expect = e-101
 Identities = 190/193 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgattacaaacggtgctccttcattatatggctagcacttagccacttggcttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttgattacaaacggtgctccttcattatatggctagcacttagccacttggcttcct 260

                                                                       
Query: 61  cttcctttggcacattcccaagcaagcattatgactggtctcacgatagtctctcggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcctttggcacattcccaagcaagcattatgactggtctcacgatagtctctcggtat 320

                                                                       
Query: 121 aacatttttattcaacttttttaaaccttgggtttaggtgtgttctgaaccactcagcac 180
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacattaagattcaacttttttaaaccttgggtttaggtgtgttctgaaccactcagcac 380

                        
Query: 181 ttggctacaaagt 193
           |||||||||||||
Sbjct: 381 ttggctacaaagt 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)