BAC Information

Click to search

BAC

Clone NameMSMg01-396J14
Chromosome4 (Build37)
Map Location 86,880,922 - 86,881,392
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396J14.T7 (MSMg01no396_j14.b1)MSMg01-396J14.TJ (MSMg01no396_j14.g1)
ACCAG497138AG497139
length1,055752
length of high quality
(start - end)
---471 (65 - 535)
definitionCHROMAT_FILE: MSMg01no396_j14.b1 PHD_FILE: MSMg01no396_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:46 2005CHROMAT_FILE: MSMg01no396_j14.g1 PHD_FILE: MSMg01no396_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACGAGAATAGAGGCGGATGGTTTCATGAGGAGAATGAGAGTGACACCT
ACGCCTAGAGGAGGAGGGTAGGAAGAGGGAGGTAGAGCGGTAGGGAATAA
AATTATACTATTATCCCGTCTTACCGGTTGGCGGTTTGTGCGTGCGCGTG
GCAGGAGCCCGGTTTCACCGCAGGCGCGAGGCGCGCGCGCTGGCGAGGGA
GGACGCACCATTGCACACCTTAGCTTATTAACGATCAATTATAAATTTAA
TATATTACACTGTTCCGCCATGTCCTTTTTGTTATTTGTGCCTGCCGCTT
CCGCATATAACAGTAACAGAAAGATTACCACTTTACCTATATACCGGTGT
GTCGGGTGGGACAGTTGTATGCTCTACGCCCTTGTACACGAATTACACGC
ACACAAGTTACACCACATATGACGAGATAACGTGCATGTGTCGGCCATGG
GCACGTTAGTCAACGGGCAAGAGGGACGAGAGGGTTGCGAAAGAAAAAGC
AACTGTAAACTCAGTATGATACGCACTATATGCAATAAGAAGGAGAAGAA
AAATAGTGGACACGAGAAAATCGGGCAGGTTGTGGGTACAGCCATTGGGC
GTACTAAACGCAGAACAATATTTACAATATACCGCCACTATATTCCGCCC
TTATTTCCCCGCCATATTACGTATACGGCCAATAACGAAATGCGAGATAA
TCGTAAAATGCGCAACACGACATAATGCGTGCACGTGATATCGGCAGTAT
CGATATTGCGAGAAACGGTGTGGGAAGACAGCTGTGTGCACAGACGACAA
TATCGATGCGAATACCGCGATATGCCGGGATACACTATAGAAGAACGGGA
TAACAATACGAGAAGATATTTGCATAGCGCTGAATAGTGAATACGATATA
ACCGCGAACGGCTNGTGGTAGTTCACAGTATAGTCGTAGATTTACAAAGA
TTGAGTAGCGGAGTTCAGGGGGGGAGAAAACACGAGGGATGTTGTAAGGT
ATACGGTCCTTAATTTATACGCCATCCCCTTAGAAACAAATAATGTATCA
TAACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTCATGGCACACGGGATGAAGGCAGCAGAGGCACA
GTTTTTAATCGGGCGGCTCTGACTCCTGGCACTGTCGCTTACCTGTATTG
TCTGCACTTCCTTGCCAATGTGGCTCTGAGAGACAAAAGGGCCATCCTGG
AGGTCACTCAAGAAGTCCCCACTGGAACCAGGAAGACAGCCAAGACTTTA
GACTCCAAGTCACTGCTGAAATCAATAGACTTGATCCACCCTCCTCTGGG
TCCTGGCCTCTTCTCTGTGCTCAGGTTTGGTGTTCAGAAGCCAGGAGGCT
AAGCCAGGCTTGCAAGGAGATGCTGACTGTTAGCTTCCTAGGCATTTAAA
AGGCAGAAAAAAACGCCTATTCCTATTGTAAAACTAATAGCCATTCATCA
TTTCTCCTCACTCACTATCTAATCAGCAGAAGAAAGCTATCTTTGGGATG
GGGTTCTATGTGCTACTGAGATGCCTTTGTAAAAGGGAGAGAATCCGAAA
GTTGTCCCTCAACTCCACAGCGTTCACTCTTGTGCTTCTCATACAACCGG
AAGAGGAAGGCCCCAGATCAACCATCCCATACCAAACATTTCCTATCCTA
TTTCTCTTAATCCAAATCCCACCCTCCCGAATTAAACTATTTTTGGCTGA
TCTTGTTATTGCCCCCAGTATAATGTTTTTTCATAACAACACGATTCCTT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_j14.g1 MSMg01no396_j14.g1 CHROMAT_FILE:
MSMg01no396_j14.g1 PHD_FILE: MSMg01no396_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:46 2005
         (471 letters)



>mm_chr4_86880722_86881592
          Length = 871

 Score =  864 bits (447), Expect = 0.0
 Identities = 465/471 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcatggcacacgggatgaaggcagcagaggcacagtttttaatcgggcggctctgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agtcatggcacacgggatgaaggcagcagaggcacagtttttaatcgggcggctctgact 612

                                                                       
Query: 61  cctggcactgtcgcttacctgtattgtctgcacttccttgccaatgtggctctgagagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cctggcactgtcgcttacctgtattgtctgcacttccttgccaatgtggctctgagagac 552

                                                                       
Query: 121 aaaagggccatcctggaggtcactcaagaagtccccactggaaccaggaagacagccaag 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 551 aaaagggccatcctggaggtcactcaagaagtccccactagaaccaggaagacagccaag 492

                                                                       
Query: 181 actttagactccaagtcactgctgaaatcaatagacttgatccaccctcctctgggtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actttagactccaagtcactgctgaaatcaatagacttgatccaccctcctctgggtcct 432

                                                                       
Query: 241 ggcctcttctctgtgctcaggtttggtgttcagaagccaggaggctaagccaggcttgca 300
           ||||||  | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 431 ggcctcagcactgtgctcaggtttggtgttcagaagccaggaggctaagccaggtttgca 372

                                                                       
Query: 301 aggagatgctgactgttagcttcctaggcatttaaaaggcagaaaaaaacgcctattcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aggagatgctgactgttagcttcctaggcatttaaaaggcagaaaaaaacgcctattcct 312

                                                                       
Query: 361 attgtaaaactaatagccattcatcatttctcctcactcactatctaatcagcagaagaa 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 attgtaaaactaataaccattcatcatttctcctcactcactatctaatcagcagaagaa 252

                                                              
Query: 421 agctatctttgggatggggttctatgtgctactgagatgcctttgtaaaag 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agctatctttgggatggggttctatgtgctactgagatgcctttgtaaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)