BAC Information

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BAC

Clone NameMSMg01-396K09
Chromosome4 (Build37)
Map Location 10,062,848 - 10,063,365
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396K09.T7 (MSMg01no396_k09.b1)MSMg01-396K09.TJ (MSMg01no396_k09.g1)
ACCAG497175AG497176
length767746
length of high quality
(start - end)		524 (35 - 558)423 (64 - 486)
definitionCHROMAT_FILE: MSMg01no396_k09.b1 PHD_FILE: MSMg01no396_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:50 2005CHROMAT_FILE: MSMg01no396_k09.g1 PHD_FILE: MSMg01no396_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGTATCCGCGGAATTCAAAAC
ATTGTCCCATGAAGTCTTGCTTATAAATTTAATAGGAAAAAAATAGTTTC
AGAAACCAAAACAAAAAGAGCTCATTACAAAATTGGGTAGACAATATTAC
ATCCAGTTGCTTATAACATGAGTGTCCGAGGGGTAAAATCCATAAAGAAA
GACTATACTTACAGATATAAAAGATAGTATTTTCTAATATTATACACAAA
AGTATTTCTGAGCTAATTTCAGTAATTATATTGGCATGGTATTAGAGTTA
TTCTGAGAATGTTGTATATATAATGCTAGCCAAAGAAAATGAGTAATTAG
GAAATATTCTAATTCTATTATCCTGTGTATCCTTGAGAATTAGTTTTCAG
TGTGGGAGATGATTAAATGCAATACTACATTAGGGAAAAATATTAATACT
GACTTTTAACTTATGAACCTGAAAATGTTTGTAAGCTTTATCCATTTAGG
AAACCACTACCATCCATGTGGTGATACTGAAATACAATTTCTCAGGGGAA
ACTAAGCCTTTAGGGACAGTTGTTTGGTCCCAAGGGAAAAAAAATAAACC
AGATGAGCCTGTACCATCTCACTATACCCAGAAAGCATTAACCTACCCAT
GAATATTAAGGGTGTCTCAAAAGGACACAGGAGCTTGGTCCAGAGATGCC
CCTTGTCCAAAAAAATGAAAATTCTTAATCCTCAAAAGAAAGGACAGTTT
ATTTAAATTCCCCCAAG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTACTTCATCTCTTATGTTCTGTTGGTGATGGTTGT
ATCTGTAGGTTTTGTTCACTGACTTAGATTTTCCATCTACAGGATTCCCT
CACTTTGTGTTTTATTTATTGCTTCTATTTCTATTTTCAGATCTTGTAGA
CTTTTATCCATTTCCTTCACCTGTTTGCTTCTTCTTGTTTCGCCCCCCCC
AAGGAATTTATTAATTTTCTCCCCCTTTTTTTTGTGTTTTGCTGAATTTA
TTAATTTTCTTCCTTCGTATTTTTCTGGATTTAGTCAAGAGAGTTATTGA
TTTCCTCTTTAAGGACGTTTATCAGTTTCATGAAGTTGTCTTTAATGTTG
TTTACCTGCGATTAAGCTGTGTGGGAATATCTAGGATTTGCTGTATGTAG
TAGGATAGCTGTGCTCTGGTGATGCCATATTGCCCTGACTATTGTTGATT
TTGCCCTTACCCTGTGGCTTATGCCCCTAGGTCTGGGGTATTTTTAAGTT
CATTAGTTATTTCTGTGCTTACCTCTATTGCTAAGATCCCTATTCCCTTT
TCTTCAGTTCTCTTTCGTTTTTCTTTCCTTACTTCTGCCTTTTCTTTTAT
CCATTTTTCTCTTGTTCCATCCTTGTTCTTTTTCTTCCTTTTTACTTTTC
TTCTTTTCCTTCTTTTCTTCCTTCTTTTTTAATTTTTTTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_k09.b1 MSMg01no396_k09.b1 CHROMAT_FILE:
MSMg01no396_k09.b1 PHD_FILE: MSMg01no396_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:50 2005
         (524 letters)



>mm_chr4_10062643_10063567
          Length = 925

 Score =  971 bits (502), Expect = 0.0
 Identities = 514/518 (99%), Gaps = 1/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattc-aaaacattgtcccatgaagtcttgcttataaatttaataggaaaaaaatagtt 64
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaattcaaaaacattgttccatgaagtcttgcttataaatttaataggaaaaaaatagtt 664

                                                                       
Query: 65  tcagaaaccaaaacaaaaagagctcattacaaaattgggtagacaatattacatccagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcagaaaccaaaacaaaaagagctcattacaaaattgggtagacaatattacatccagtt 604

                                                                       
Query: 125 gcttataacatgagtgtccgaggggtaaaatccataaagaaagactatacttacagatat 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gcttataacatgagtgtccggggggtaaaatccataaagaaagactatacttacagatat 544

                                                                       
Query: 185 aaaagatagtattttctaatattatacacaaaagtatttctgagctaatttcagtaatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaaagatagtattttctaatattatacacaaaagtatttctgagctaatttcagtaatta 484

                                                                       
Query: 245 tattggcatggtattagagttattctgagaatgttgtatatataatgctagccaaagaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tattggcatggtattagagttattctgagaatgttgtatatataatgctagccaaagaaa 424

                                                                       
Query: 305 atgagtaattaggaaatattctaattctattatcctgtgtatccttgagaattagttttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atgagtaattaggaaatattctaattctattatcctgtgtatccttgagaattagttttc 364

                                                                       
Query: 365 agtgtgggagatgattaaatgcaatactacattagggaaaaatattaatactgactttta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agtgtgggagatgattaaatgcaatactacattagggaaaaatattaatactgactttta 304

                                                                       
Query: 425 acttatgaacctgaaaatgtttgtaagctttatccatttaggaaaccactaccatccatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acttatgaacctgaaaatgtttgtaagctttatccatttaggaaaccactaccatccatg 244

                                                 
Query: 485 tggtgatactgaaatacaatttctcaggggaaactaag 522
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 243 tggtgatactgaaatacaatttctcagaggaaactaag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space:   470310
Effective search space used:   470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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