Query= MSMg01no396_l23.b1 MSMg01no396_l23.b1 CHROMAT_FILE:
MSMg01no396_l23.b1 PHD_FILE: MSMg01no396_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:57 2005
(436 letters)
>mm_chr4_14550830_14551666
Length = 837
Score = 683 bits (353), Expect = 0.0
Identities = 415/439 (94%), Gaps = 6/439 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcctgtccttcctgctgctcccaactagcccatcataaactctcccccaacaa 63
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 199 ggaattctcctgtcctgcctgctgctcccaactagctcatcatgaactctcccccaacaa 258
Query: 64 gtgtgcattaatcagtcactgtggaggaggaaaggaaggagagcataggtattacgtaag 123
||| ||||||||| ||||||| | ||||||||||||||||||| |||||||||| || |
Sbjct: 259 gtgcgcattaatcggtcactgcgaaggaggaaaggaaggagagtgtaggtattacatatg 318
Query: 124 ctttaggagatacttactgaaggaaatgggaaaaggtataactaacattctattgggggg 183
|||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 319 ctttaggagatacttaatgaaggaaatggaaaaaggtataactaacattctatcgggggg 378
Query: 184 g------aggtaaattaataatgaagtcacacagaaagagttggatgctaaggaacaggg 237
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggggggaaggtaaattaataatgaagtcacacagaaagagttggatgctaaggaacaggg 438
Query: 238 gaatttcattaacattgagggcaaattcatcccatcccacccagactcttgtgttccagc 297
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 439 gaatttcattaacattgagggcaaattcatcccatcctgcccagacacttgtgttccagc 498
Query: 298 aagaaagagttaatgacctgccacgtactgacatcacatcttttactgccagcattgaga 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagaaagagttaatgacctgccatgtactgacatcacatcttttactgccagcattgaga 558
Query: 358 ttcatccacatatggacgagcttttatgaaaatctacatcttccatgaacacttccctgg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttcatccacatatggacgagcttttatgaaaatctacatcttccatgaacacttccctgg 618
Query: 418 ctccacagcattctgttcc 436
|||||||||||||||||||
Sbjct: 619 ctccacagcattctgttcc 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space: 353556
Effective search space used: 353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_l23.g1 MSMg01no396_l23.g1 CHROMAT_FILE:
MSMg01no396_l23.g1 PHD_FILE: MSMg01no396_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:57 2005
(413 letters)
>mm_chr4_14745873_14746685
Length = 813
Score = 768 bits (397), Expect = 0.0
Identities = 409/413 (99%)
Strand = Plus / Minus
Query: 1 actttgtagaccgggctcatcttgtactcacaaagatccacctctctgcctcccaagtcc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 451 actttgtagaccgggctcatcttgtactcacaaagattcacctctctgcctcccaagtcc 392
Query: 61 tggatttaaaggcattgcacaagtaagtgtagggactggaccactgaatcttataagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tggatttaaaggcattgcacaagtaagtgtagggactggaccactgaatcttataagaca 332
Query: 121 gaacttggtaatcagctagtcatgttgttcatgtttttaactagtccttacaaggacagg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 331 gaacttggtaatcagctagtcatgttgttcatgtttttaactagttcttacaaggacagg 272
Query: 181 tgtggttgcaaatgccattaatcccagcacttggaagtctgaggtaggaggttggagagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgtggttgcaaatgccattaatcccagcacttggaagtctgaggtaggaggttggagagt 212
Query: 241 attggctagtctcagctaccatagcaaggcactgcttcaaataagcaaacaaattagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 attggctagtctcagctaccatagcaaggcactgcttcaaataagcaaacaaattagcag 152
Query: 301 attttctaagaagatatcccttgccccttcctagccgctcctttttcttctgtgaaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 attttctaagaagatatcccttgccccttcctagccgctcctttttcttctgtgaaacaa 92
Query: 361 gctctcacattgcaggccaggctggactagaacactgcagcccaagctgtcct 413
| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 91 gttctcacattgcaggccaggctggactagaacactgcaacccaagctgtcct 39
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
