Query= MSMg01no396_m18.b1 MSMg01no396_m18.b1 CHROMAT_FILE:
MSMg01no396_m18.b1 PHD_FILE: MSMg01no396_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:01 2005
(342 letters)
>mm_chr4_99166313_99167054
Length = 742
Score = 638 bits (330), Expect = 0.0
Identities = 339/342 (99%)
Strand = Plus / Minus
Query: 1 ttattggctccttgggcattttttcttttcatcaaaagcattacttccagcatttttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttattggctccttgggcattttttcttttcatcaaaagcattacttccagcatttttctt 483
Query: 61 ctaagattatctccaaatgccataaagttccgttttcttctattgcctctgtaattttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctaagattatctccaaatgccataaagttccgttttcttctattgcctctgtaattttcc 423
Query: 121 ttctcatttccttctcgcagactcgggcctccataaaataactcatagtttaatataatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttctcatttccttctcgcagactcgggcctccataaaataactcatagtttaatataatg 363
Query: 181 catgttctccagaccctttcgctttggcctgcttggaagtactctatcaagaagctttcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 catgttctccagaccctttcgctttggcctgcttggaagtactctatcaagaagctttcg 303
Query: 241 tcttgtaattttaacataatcttccttgcttttccacacatggtcgctactttttttttt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tcttgtaataagaacataatcttccttgcttttccacacatggtcgctactttttttttt 243
Query: 301 cccctcatatatttgggggaggggagtagtcagggaaaaata 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cccctcatatatttgggggaggggagtagtcagggaaaaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_m18.g1 MSMg01no396_m18.g1 CHROMAT_FILE:
MSMg01no396_m18.g1 PHD_FILE: MSMg01no396_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:01 2005
(471 letters)
>mm_chr4_98933802_98934674
Length = 873
Score = 851 bits (440), Expect = 0.0
Identities = 465/474 (98%), Gaps = 4/474 (0%)
Strand = Plus / Plus
Query: 1 ctcgctttaaagaaaagaatctttgagaagcattctgttatctgttttgaactttgttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgctttaaagaaaagaatctttgagaagcattctgttatctgttttgaactttgttca 260
Query: 61 attcacaggctaaggtttgtaaagatttttccagtgaatacaagcagtgctaggaaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcacaggctaaggtttgtaaagatttttccagtgaatacaagcagtgctaggaaaact 320
Query: 121 tcgaaatgatgtttgtattttaatgatggctttccccagaaattagttgtaaaaatcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgaaatgatgtttgtattttaatgatggctttccccagaaattagttgtaaaaatcact 380
Query: 181 agtaaat-ttaaaaaaattatctttgggattatctattagagttcagttaatttttttgt 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaatattaaaaaaattatctttgggattatctattagagttcagttaatttttttgt 440
Query: 240 cttcatcttttataaaaatatccacaagatgaaggaatatgcggagacacaggtctggct 299
|||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 441 cttcatctttaaaaaaaatatccacaagat-atggaatatgcggagacacaggtctggct 499
Query: 300 taggtatggagatttggtgtctatatgaacgccacatcattaagataacggaatgattgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taggtatggagatttggtgtctatatgaacgccacatcattaagataacggaatgattgt 559
Query: 360 gggggcggtaattgatggctaattcatcctttctccatcctttgctctctctgcccctcc 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggggcggtaattgatgggtaattcatcctttctccatcctttgctctctctgcccctcc 619
Query: 420 ccgc--tttgttttgttttaaatggctgtggagaaatcaattgtaacttttaaa 471
|| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccccctttgttttgttttaaatggctgtggagaaatcaattgtaacttttaaa 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 873
Length adjustment: 10
Effective length of query: 461
Effective length of database: 863
Effective search space: 397843
Effective search space used: 397843
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
