MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-396O10
Chromosome	4 (Build37)
Map Location	40,139,522 - 40,139,761
singlet/doublet	singlet
Overlap gene	Aco1
Upstream gene	1700009N14Rik, LOC435775, LOC329824, LOC621880, LOC384007
Downstream gene	Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2
Link	Open Mouse BAC browser

Click to get alignment info.

name	1700009N14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75471 MGI:1922721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC435775 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435775
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC329824 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:329824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC621880 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 4 Proteins pseudo : _no_value

name	LOC384007 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384007
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Aco1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11428 MGI:87879
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx58 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230073 MGI:2442858
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Topors (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106021 MGI:2146189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufb6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230075 MGI:2684983
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930509K18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75819 MGI:1923069
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	A930001M12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320500 MGI:2444167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aptx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66408 MGI:1913658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC665630 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665630
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC622208 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 18 ESTs

name	Dnaja1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15502 MGI:1270129
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smu1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74255 MGI:1915546
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042305 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042305
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 129 ESTs, 5 Proteins

name	B4galt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14595 MGI:95705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039668 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 120 ESTs, 6 Proteins

name	Spink4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20731 MGI:1341848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bag1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12017 MGI:108047
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chmp5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76959 MGI:1924209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nfx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74164 MGI:1921414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aqp7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11832 MGI:1314647
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aqp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11828 MGI:1333777
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nol6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230082 MGI:2140151
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ube2r2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67615 MGI:1914865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700009N14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487357 GeneID:75471 MGI:1922721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700009N14 gene transcript_id : NM_001081095.1

name	Aco1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347486 GeneID:11428 MGI:87879
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aconitase 1 transcript_id : NM_007386.2

name	Ddx58 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45598376 GeneID:230073 MGI:2442858
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 transcript_id : NM_172689.2

name	Topors (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:100817351 GeneID:106021 MGI:2146189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : topoisomerase I binding, arginine/serine-rich transcript_id : NM_134097.3

name	Ndufb6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363208 GeneID:230075 MGI:2684983
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 transcript_id : NM_001033305.2

name	4930509K18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252290 GeneID:75819 MGI:1923069
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 4930509K18 gene transcript_id : XM_001477934.1

name	A930001M12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801914 GeneID:320500 MGI:2444167
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A930001M12 gene transcript_id : NM_177175.3

name	Aptx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115292443 GeneID:66408 MGI:1913658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aprataxin transcript_id : NM_001025444.2

name	Aptx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115292446 GeneID:66408 MGI:1913658
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aprataxin transcript_id : NM_025545.4

name	LOC622208 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94371690 GeneID:622208
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 18 ESTs product : hypothetical LOC622208 transcript_id : XM_896940.2

name	Dnaja1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802804 GeneID:15502 MGI:1270129
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily A, member 1 transcript_id : NM_008298.3

name	Smu1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803589 GeneID:74255 MGI:1915546
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) transcript_id : NM_021535.3

name	LOC100042305 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252292 GeneID:100042305
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 129 ESTs, 5 Proteins product : similar to presenilin enhancer 2 homolog transcript_id : XM_001478012.1

name	B4galt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129977 GeneID:14595 MGI:95705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 transcript_id : NM_022305.3

name	LOC100039668 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252250 GeneID:100039668
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 120 ESTs, 6 Proteins product : similar to F-box and leucine-rich repeat protein 10 transcript_id : XM_001473301.1

name	Spink4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114842399 GeneID:20731 MGI:1341848
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine peptidase inhibitor, Kazal type 4 transcript_id : NM_011463.2

name	Bag1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753159 GeneID:12017 MGI:108047
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Bcl2-associated athanogene 1 transcript_id : NM_009736.1

name	Chmp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13386441 GeneID:76959 MGI:1924209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chromatin modifying protein 5 transcript_id : NM_029814.1

name	Nfx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347528 GeneID:74164 MGI:1921414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear transcription factor, X-box binding 1 transcript_id : NM_023739.3

name	Aqp7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982531 GeneID:11832 MGI:1314647
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aquaporin 7 transcript_id : NM_007473.3

name	Aqp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121949812 GeneID:11828 MGI:1333777
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aquaporin 3 transcript_id : NM_016689.2

name	Nol6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134031987 GeneID:230082 MGI:2140151
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleolar protein family 6 (RNA-associated) transcript_id : NM_139236.3

name	Ube2r2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802140 GeneID:67615 MGI:1914865
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin-conjugating enzyme E2R 2 transcript_id : NM_026275.3

name	1700009N14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487358 GeneID:75471 MGI:1922721
definition	codon_start : 1 note : novel Ras protein product : hypothetical protein LOC75471 protein_id : NP_001074564.1

name	Aco1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347487 CCDS:CCDS18042.1 GeneID:11428 MGI:87879
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003994 - aconitate hydratase activity [Evidence IEA]; GO:0016836 - hydro-lyase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0030350 - iron-responsive element binding [Evidence IDA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006879 - iron ion homeostasis [Evidence TAS]; GO:0008152 - metabolism [Evidence IEA]; GO:0006445 - regulation of translation [Evidence TAS]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA] codon_start : 1 note : cytoplasmic aconitase product : aconitase 1 protein_id : NP_031412.2

name	Ddx58 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45598377 CCDS:CCDS18043.1 GeneID:230073 MGI:2442858
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0042981 - regulation of apoptosis [Evidence IEA]; GO:0009615 - response to virus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : DEAD/H box polypeptide RIG-I protein_id : NP_766277.2

name	Topors (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29336062 GeneID:106021 MGI:2146189
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IDA]; GO:0045941 - positive regulation of transcription [Evidence IGI]; GO:0042127 - regulation of cell proliferation [Evidence IDA]; GO:0006974 - response to DNA damage stimulus [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : topoisomerase I binding arginine/serine-rich product : topoisomerase 1-binding RING finger protein_id : NP_598858.2

name	Ndufb6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781779 CCDS:CCDS18045.1 GeneID:230075 MGI:2684983
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0003954 - NADH dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] codon_start : 1 product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 protein_id : NP_001028477.1

name	4930509K18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252291 GeneID:75819 MGI:1923069
definition	codon_start : 1 product : hypothetical protein LOC75819 protein_id : XP_001477984.1

name	A930001M12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893173 CCDS:CCDS18046.1 GeneID:320500 MGI:2444167
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC320500 protein_id : NP_796149.1

name	Aptx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32526865 GeneID:66408 MGI:1913658
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005654 - nucleoplasm [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence TAS]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; forkhead-associated domain histidine-triad like product : aprataxin isoform a protein_id : NP_079821.3

name	Aptx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887792 GeneID:66408 MGI:1913658
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005654 - nucleoplasm [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence TAS]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; forkhead-associated domain histidine-triad like product : aprataxin isoform b protein_id : NP_001020615.1

name	LOC622208 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94371691 GeneID:622208
definition	codon_start : 1 product : hypothetical protein protein_id : XP_902033.2

name	Dnaja1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680297 CCDS:CCDS18049.1 GeneID:15502 MGI:1270129
definition	GO_function : GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0050750 - low-density lipoprotein receptor binding [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030521 - androgen receptor signaling pathway [Evidence IMP]; GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]; GO:0030317 - sperm motility [Evidence IMP]; GO:0007283 - spermatogenesis [Evidence IMP] codon_start : 1 note : heat shock protein, DNAJ-like 2; neural precursor cell expressed, developmentally down-regulated gene 7 product : DnaJ (Hsp40) homolog, subfamily A, member 1 protein_id : NP_032324.1

name	Smu1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981191 CCDS:CCDS18050.1 GeneID:74255 MGI:1915546
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : smu-1 suppressor of mec-8 and unc-52 homolog protein_id : NP_067510.2

name	LOC100042305 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252293 GeneID:100042305
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478062.1

name	B4galt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11602910 CCDS:CCDS18051.1 GeneID:14595 MGI:95705
definition	EC_number : 2.4.1.38 GO_component : GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0003831 - beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity [Evidence IDA] [Evidence IMP]; GO:0004461 - lactose synthase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003945 - N-acetyllactosamine synthase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0045136 - development of secondary sexual characteristics [Evidence IMP]; GO:0030198 - extracellular matrix organization and biogenesis [Evidence IMP]; GO:0006012 - galactose metabolism [Evidence IDA]; GO:0009312 - oligosaccharide biosynthesis [Evidence IDA] codon_start : 1 note : galactosyltransferase 2 beta 1, 4; glycoprotein galactosyltransferase beta 1, 4; beta-1,4-GalT; B-1,4-GalT1; beta-1,4-GalT1; b1,4-Galactosyltransferase I; beta 1,4-Galactosyltransferase I; beta-1,4-galactosyltransferase (short form); UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 1 product : UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 protein_id : NP_071641.1

name	LOC100039668 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252251 GeneID:100039668
definition	codon_start : 1 product : similar to F-box and leucine-rich repeat protein 10 protein_id : XP_001473351.1

name	Spink4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114842400 CCDS:CCDS18052.1 GeneID:20731 MGI:1341848
definition	GO_function : GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 product : serine protease inhibitor, Kazal type 4 protein_id : NP_035593.2

name	Bag1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34398362 GeneID:12017 MGI:108047
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0030182 - neuron differentiation [Evidence IDA]; GO:0006457 - protein folding [Evidence IEA]; GO:0006464 - protein modification [Evidence IEA] codon_start : 1 exception : mismatches in translation note : non-AUG (CUG) translation initiation codon product : Bcl2-associated athanogene 1 isoform 1L protein_id : NP_033866.3 transl_except : (pos:complement(40895233..40895235),aa:Met)

name	Chmp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386442 CCDS:CCDS18053.1 GeneID:76959 MGI:1924209
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008333 - endosome to lysosome transport [Evidence IMP]; GO:0007040 - lysosome organization and biogenesis [Evidence IMP]; GO:0015031 - protein transport [Evidence IEA]; GO:0001919 - regulation of receptor recycling [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : likely ortholog of H. sapiens SNF7 domain containing 2 product : chromatin modifying protein 5 protein_id : NP_084090.1

name	Nfx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110347529 CCDS:CCDS18054.1 GeneID:74164 MGI:1921414
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045347 - negative regulation of MHC class II biosynthesis [Evidence IDA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : nuclear X box binding factor 1; testis expressed gene 42 product : nuclear transcription factor, X-box binding 1 protein_id : NP_076228.2

name	Aqp7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680712 CCDS:CCDS18055.1 GeneID:11832 MGI:1314647
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0015288 - porin activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]; GO:0015250 - water channel activity [Evidence TAS] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0006833 - water transport [Evidence TAS] codon_start : 1 product : aquaporin 7 protein_id : NP_031499.1

name	Aqp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121949813 GeneID:11828 MGI:1333777
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0015288 - porin activity [Evidence IEA]; GO:0015250 - water channel activity [Evidence TAS] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0006833 - water transport [Evidence TAS] codon_start : 1 product : aquaporin 3 protein_id : NP_057898.2

name	Nol6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118026904 GeneID:230082 MGI:2140151
definition	GO_component : GO:0000794 - condensed nuclear chromosome [Evidence IDA]; GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005515 - protein binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA]; GO:0030515 - snoRNA binding [Evidence ISS] GO_process : GO:0006365 - 35S primary transcript processing [Evidence ISS]; GO:0008150 - biological_process [Evidence ND]; GO:0007046 - ribosome biogenesis [Evidence NAS] codon_start : 1 product : nucleolar protein family 6 protein_id : NP_631982.2

name	Ube2r2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385778 CCDS:CCDS18057.1 GeneID:67615 MGI:1914865
definition	codon_start : 1 product : ubiquitin-conjugating enzyme E2R 2 protein_id : NP_080551.1

name	LOC435775 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435775
definition	number : 1 pseudo : _no_value

name	LOC329824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:329824
definition	number : 1 pseudo : _no_value

name	LOC329824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:329824
definition	number : 2 pseudo : _no_value

name	LOC329824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:329824
definition	number : 3 pseudo : _no_value

name	LOC384007 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384007
definition	number : 1 pseudo : _no_value

name	LOC665630 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665630
definition	number : 2 pseudo : _no_value

name	LOC665630 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665630
definition	number : 1 pseudo : _no_value

name	LOC621880 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252289 GeneID:621880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 4 Proteins product : similar to PDZ binding kinase (predicted) pseudo : _no_value transcript_id : XR_033416.1

clone name	MSMg01-112A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345P12
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-396O10.T7 (MSMg01no396_o10.b1)	MSMg01-396O10.TJ (MSMg01no396_o10.g1)
ACC	AG497366	AG497367
length	770	867
length of high quality (start - end)	244 (59 - 302)	73 (64 - 136)
definition	CHROMAT_FILE: MSMg01no396_o10.b1 PHD_FILE: MSMg01no396_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:09 2005	CHROMAT_FILE: MSMg01no396_o10.g1 PHD_FILE: MSMg01no396_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:09 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	GGGCGCTAAACGACTCCTATTTCAACACCACCGCGGAATTCCCTCGATTC CTGAAGACATCCCTGGNGACTGGGAATTTATAAATTATTTGTTTATAGCT AATTGGATCAGAAAGTAAAGTCCTTTAAAAAGGAGTCAACTGAAAGGTGC TCAAGGCAAGCCTTTGGTTAAATCCTAAAGCAGGCTTTTTCACGTGTTAA AATCCTGTGCATGGCTGGGGCTGTGCTTAATTCCATTTGTCATCACCTGA ACCCTGAGTTAGCCAGAACTCATGAATATAGAAATGCTACATACACAACC TGTTNGATGNNTGGCCTGTTGCTATGTTAATGCTAAACTCTGTACCCAAA GGTCTAGGGCCAGGAGTTCACATTCACAAGCTTTTGCTGTGCAAAACTTG CCCCCTAATTTAAAACTACTGGTTAAATAAAATTGGCTACTGGAGGGATC AGGGGTAGGTGGGTTTTGAGCTACCTGTTTGATTGCCGAAAAGTACGCCT TGGTACCCTGTTGCGACTGCTCACGCACCTATGATTAAGCTCACTATAAT AATAAACTGTTTGCTATAACTCCCTGGGTAGTCTTTTTTCTCTATTGCTC ACCCACTCTTCATTATATCTTATCCTCCAAGATAACATGATATCTCTTTT TTTTCTACCCCAATCGTTCTGCCCCCACCACTCTTTCTCTCCACTCCCCC CTTTTATTCCACCATTATTCACAGTACTAACTAATGAACTCATTTTTCCG CCTCCCCTTTCTCTTTTTTN	GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXCAGGACAAGGAAGAGGGACTGGGAGGGTTGGTGAGCA GGGTAAAGGCCGATGGAATAGGGGACTTTTGGGGAGGCCCCCCCCTCTCC CCCTCCCCCCCCCCTCCTTCCCCCCCCCTCTCCCCTTCCCTCTTTCCATC CCCCCCCCCCCCTTCCCCCCTCCCTCCCTCCTCTTCCCCTCTTTTTTTCT CCCCCTCCTCCCCCTCTTCTCCCCCTCCCCTCCTTCCTCCCTTTTCCCCC CCCCCCCCCCCATTTTTGTCTTTTCCCTCCCCATCCCCCCCCCTCTCCTT CTCTTTCTTCTTTTCCCTCCTTTCCCTATATCTCTTATTCTTCCCTTTCT CCTCCCCCCCCTTTTCCTTTCCCCCCCCCTTTTCCCCCTCCCCTATTCCC TCTTCTCTCCCCCCCCCCCTCCCCCCCCTCTCTCCCCCCCCCCTCCTCCC TTACCTCCCTTCCCCCCCCCCCTCCCCCCTCTCCATCTCCTCCCTCTCCC CTCCCTTCTCCCTCCCCCTCCTCCTTCCTATCCCCCCCTCCCCCCCTCCT CTCTTTCCCCCCTCTCCTTTACTCCTTTCCTCCCCCCCCTTTTCCATCCT TTCCCTACTCCCTTTTCCCACCTTTCTTCTTCTCCCCTCTCTCTCCCCCC TTACGCTTTTCACCTCTCCTCATCCCACCTTTCCTTTTCTCCCCCTCCCT CCCCCCCCTTTCTTCCTCCCCTTTCTCTCCCCCCCCTTCTTTTTCCGCTT TTCCCCCCTCTCCCCTCTTCCCTCTCTTTTCCCCCCCCCCCTCTCCCTTT CCCTCTCTTTCCTCCTC
quality values	Open. Hide. 9 9 9 12 17 15 12 8 8 8 25 28 27 21 10 10 10 10 10 9 9 9 8 8 8 8 8 8 8 11 11 17 19 27 47 37 37 37 40 40 41 43 27 27 8 6 6 6 8 8 6 8 8 10 10 10 10 10 10 20 22 47 47 27 27 3 0 3 25 23 39 39 41 28 30 28 28 36 36 57 57 57 50 50 53 53 53 57 57 57 57 57 57 59 57 57 68 53 43 30 29 19 19 19 16 13 13 15 15 22 22 42 42 48 47 47 47 47 57 48 54 57 57 57 57 57 57 57 57 57 57 59 57 57 57 57 47 57 57 57 57 57 57 57 26 26 11 11 11 27 34 57 57 57 57 54 54 54 57 59 59 57 68 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 57 57 57 59 59 68 68 68 57 57 57 57 57 52 52 52 59 52 57 57 57 57 57 57 57 57 43 43 43 46 46 57 46 57 43 43 50 50 50 50 48 48 48 48 48 59 59 68 68 57 44 36 36 27 28 28 44 36 26 25 44 44 57 57 57 68 68 68 57 57 57 57 57 54 54 54 54 54 68 68 57 57 48 48 48 57 57 57 57 57 54 54 54 57 57 59 59 57 57 57 57 50 53 57 57 57 57 59 59 57 48 59 59 50 47 47 41 41 25 27 10 7 7 3 0 3 6 7 3 0 0 3 12 12 19 24 34 35 39 39 48 48 59 47 57 43 57 43 44 43 48 48 57 57 59 59 59 59 59 59 59 40 32 24 24 24 28 28 32 28 37 20 20 18 27 27 41 41 47 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 57 57 57 57 57 57 59 48 57 57 59 57 57 47 43 43 46 47 59 59 59 59 47 47 32 28 23 17 17 17 17 17 17 20 30 41 47 41 43 43 43 43 48 57 48 43 47 41 39 43 47 47 48 43 43 39 34 34 34 34 34 43 43 37 43 43 43 37 37 37 43 39 34 34 32 32 32 34 24 25 31 31 32 28 22 22 22 22 23 25 34 32 28 22 12 9 9 9 12 10 8 8 8 8 8 8 7 7 10 8 6 6 6 6 8 8 11 10 10 11 10 10 10 10 10 10 9 9 9 8 8 8 9 11 22 16 16 10 10 10 10 10 11 11 11 8 8 8 6 6 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 6 8 8 8 8 8 8 8 8 8 8 8 11 13 13 13 9 9 8 8 10 8 8 8 8 8 8 8 8 8 9 8 10 8 9 10 8 8 8 8 8 8 8 11 15 17 17 11 10 10 10 8 6 6 8 8 8 8 8 8 8 6 6 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 9 12 12 12 12 10 9 9 8 8 11 15 10 6 6 8 8 11 10 10 8 8 8 8 8 9 9 11 11 11 28 21 20 21 19 10 9 8 8 10 15 10 8 11 7 7 10 10 9 9 10 10 8 8 8 8 10 8 8 8 8 10 6 6 6 6 8 12 10 11 8 8 8 10 8 10 9 9 9 10 10 13 6 9 9 12 12 8 8 8 8 8 8 8 8 6 6 8 10 12 10 8 8 8 7 7 7 10 9 9 11 12 12 12 12 8 8 6 6 8 8 10 6 6 6 8 13 13 14 11 11 6 6 6 11 10 8 8 8 10 10 10 8 8 8 8 10 11 12 15 12 3 0	Open. Hide. 10 10 10 10 16 16 24 28 41 41 41 39 44 39 39 44 39 21 23 9 6 6 6 6 6 6 6 8 8 10 10 15 23 22 36 37 37 30 28 19 25 22 31 36 59 36 29 16 12 8 8 7 7 7 8 10 15 11 11 19 23 29 30 28 28 28 32 36 33 34 31 36 44 57 57 57 59 59 48 48 50 50 48 48 47 48 47 47 47 48 57 57 48 48 48 57 43 43 43 37 37 37 43 35 35 32 23 23 11 11 11 11 16 19 34 33 33 33 33 33 33 47 40 40 40 43 43 48 32 25 15 11 11 12 14 9 13 11 10 8 8 8 8 11 13 19 11 11 11 13 9 9 8 8 8 8 10 10 11 11 16 12 10 9 9 10 10 10 13 10 14 16 18 12 12 11 10 10 11 11 9 10 16 16 11 8 8 8 8 8 8 8 8 8 8 11 7 7 7 10 15 19 15 12 19 11 11 11 22 12 17 12 19 8 8 8 8 8 8 11 8 9 9 9 10 13 11 10 8 10 8 6 8 8 10 11 8 12 8 8 8 12 19 14 14 11 12 9 9 9 12 10 14 11 9 10 10 10 8 8 8 10 19 9 9 8 8 8 8 10 10 19 21 21 14 13 10 10 14 9 9 9 17 13 13 8 8 6 6 10 10 11 12 8 8 9 15 15 19 16 8 8 8 8 8 11 16 15 8 8 8 8 8 10 12 12 9 9 9 9 9 11 13 12 10 10 10 10 10 18 21 11 11 11 12 18 21 22 11 13 10 10 8 8 8 10 12 10 10 8 8 8 8 8 8 8 8 8 8 8 8 11 13 15 12 12 10 8 8 8 9 9 9 9 8 8 8 8 8 8 8 13 10 10 10 8 8 9 13 13 14 15 10 15 9 9 8 8 8 8 10 10 15 14 12 13 13 12 14 12 10 10 10 12 10 8 10 10 10 10 10 12 14 11 11 11 17 18 11 11 9 9 9 9 15 17 21 15 10 9 8 10 8 8 8 8 13 10 10 8 8 8 8 10 10 10 8 6 8 12 13 22 21 15 11 14 13 11 10 9 11 16 15 20 19 19 10 10 11 15 8 8 10 11 12 10 8 8 7 7 9 17 15 13 10 14 14 13 10 8 8 8 8 8 8 8 8 8 8 11 11 15 19 28 15 15 14 14 14 14 14 14 18 18 24 28 23 23 11 8 8 11 13 8 8 9 10 12 13 9 9 10 11 8 7 6 8 6 8 8 10 16 15 20 13 10 10 12 10 10 10 10 10 14 12 9 11 9 8 8 8 8 8 6 8 10 12 11 8 8 8 10 15 13 15 13 15 10 19 16 19 18 19 8 12 8 6 8 6 8 8 9 9 9 10 10 10 10 10 10 15 13 14 12 9 9 13 7 8 8 8 7 8 8 10 8 10 10 13 26 19 19 22 20 23 21 26 19 17 10 11 12 9 9 9 9 10 13 10 10 16 16 22 17 15 9 9 9 12 9 11 11 12 11 11 11 9 8 8 6 6 11 15 10 8 7 7 11 8 10 10 12 18 12 16 22 28 17 13 9 9 9 9 9 11 8 8 8 8 8 13 10 10 9 9 9 10 10 8 11 8 8 8 10 8 10 9 8 10 8 8 8 10 10 7 6 6 6 6 8 8 8 8 10 10 13 6 9 9 9 15 17 14 11 11 8 8 8 9 10 12 10 13 19 27 32 17 16 13 11 8 8 9 10 11 11 12 16 16 15 15 14 9 9 9 9 9 12 10 9 9 12 12 19 18 15 15 11 11 11 11 8 8 8 8 6 6 6 7 12 15 37 32 27 24 9 13 9 7 14 15 18 17 8 8 8 9 9 13 10 12 8 8 8 8 8 15 15 20 28 14 11 10 9 12 8 11 8 10 10 9 13 15 14 12 12 8 8 8 8 8 8 8 8 8 6 6 8 8 8 11 10 9 9 9 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no396_o10.b1 MSMg01no396_o10.b1 CHROMAT_FILE:
MSMg01no396_o10.b1 PHD_FILE: MSMg01no396_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:09 2005
         (244 letters)



>mm_chr4_40139318_40139961
          Length = 644

 Score =  443 bits (229), Expect = e-129
 Identities = 237/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ctggngactgggaatttataaattatttgtttatagctaattggatcagaaagtaaagtc 64
           |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 ctggtgactgggaatttataaattatttgtttatagctaagtggatcagaaagtaaagtc 385

                                                                       
Query: 65  ctttaaaaaggagtcaactgaaaggtgctcaaggcaagcctttggttaaatcctaaagca 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttaaaaaggagtcaactgaaaggggctcaaggcaagcctttggttaaatcctaaagca 325

                                                                       
Query: 125 ggctttttcacgtgttaaaatcctgtgcatggctggggctgtgcttaattccatttgtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggctttttcacgtgttaaaatcctgtgcatggctggggctgtgcttaattccatttgtca 265

                                                                       
Query: 185 tcacctgaaccctgagttagccagaactcatgaatatagaaatgctacatacacaacctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcacctgaaccctgagttagccagaactcatgaatatagaaatgctacatacacaacctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information