BAC Information

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BAC

Clone NameMSMg01-396P09
Chromosome4 (Build37)
Map Location 117,051,473 - 117,051,788
singlet/doubletsinglet
Overlap gene4931406I20Rik
Upstream geneMast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53
Downstream geneLOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396P09.T7 (MSMg01no396_p09.b1)MSMg01-396P09.TJ (MSMg01no396_p09.g1)
ACCAG497412AG497413
length789775
length of high quality
(start - end)
343 (63 - 405)415 (69 - 483)
definitionCHROMAT_FILE: MSMg01no396_p09.b1 PHD_FILE: MSMg01no396_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:13 2005CHROMAT_FILE: MSMg01no396_p09.g1 PHD_FILE: MSMg01no396_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGTGCGCTAAACGACTCACTAAATCGAGAGAATCCGCGGAATTCCTTCC
CTTCCCCTCTTCTCAAAGCATAACTCATCCAGTCTAAACTTCTAGAATTT
GTCATCATTTTTTGCCCCACGTAGGAGCTGTCTCTTTCTCCGTTGCATTT
CACTTGAGTTCCAACTTGCAAAAGGGGGTTTTGAATCCAGATTCTGTATT
CCATCTTGCTGTCGGTCCCCAGCCTAGTCTCATTATAAATCTGTTACCCG
GGTTGTTTACAGCGTTAAGTTGTTGGTAAAACTGCTGAAGACAGATCCTA
GCATGAGGATTTTTGCTTTCAAACAGCGATCAGTATTTCCTGGGTACGGT
TGTCCAGCTAGAATCCATGTTTCTCCCCTGTGCTTTCTTCTACCCTCTTC
TTCCCACCCGCTTTACCCTATAAATGCTTCTTTAAAACCATGTCAGTCCA
CATGCTGTCACTGTGACTTAATGCCTGAGTGGAGCCTACTTATAGAGCAG
AAGGTTTATTTTGGCTCATGGTTTCATATAATTACGTCGGCTGTCTTCTA
TGCTCCGTTCCCAAGTTGAACCAAACTGTCTCAGTCATTTTCCATTTCAT
TTAATTTCTTTTTCCTATTGCTCTAATGCTTTTCCGCCATTGCCCCTTTC
TCCTTCCATACTCCTTTCCTTGCCCTTCTCTCTTGCTGTTTTTGCCTTTA
TTTTATTATTTACCTTCCTGAATCGCTTGCAATTCCTAATTTACAATTTC
CATCCCCTTTTCTCATATTTCTTTCCCCCTTTATTATTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGCCTCCACACTGGCTGGTTCCCAATTGCCT
GTAACTCCAGCTCCAGAGGATTCAGTGTCTTCTTACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACAGAG
ACTCACACAGACTCTCACACACACAGACTCACACACACACACTCACACAG
ACTCACACACACACAGACTCACACACACACACACACACACACACACACAC
ATACACAGACTCTTTACACACACAGACTCACACACACACACATACTCACA
CACACACACAGACTCACACAGACTCACACACACACACACACACACACAGA
CTCACACAGACTCACACACACACACAGACTCATATTCACACACACACTTT
ATTTTATTTTTAAAAGATTTATTTTTTTAATCTATGAATGCTCTATCTGC
ATGCATACCTGTGTGCCAGAGAGGGTACTGGATCCCATTAATAGACGTTT
TGTAACCAACATGTGGTTGCTGGGATTTGAACTCTCGACCTCCTGGAAGA
ACCGTCCAAATAGTCCCTGTGCTCCTAAACATTGACCCTCTTCTCCAGTC
CTCAATTTATTTTCCTAACCGGGGCGACTTGCAAACCAATAGGCCAAAAT
GACCCTCTCCTTAATTGGGCCAAAGAGAGGTTATCTTTCACGGATAGGGT
CCTAAAAACTAAAAACCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_p09.b1 MSMg01no396_p09.b1 CHROMAT_FILE:
MSMg01no396_p09.b1 PHD_FILE: MSMg01no396_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:13 2005
         (343 letters)



>mm_chr4_117051473_117052215
          Length = 743

 Score =  565 bits (292), Expect = e-165
 Identities = 310/320 (96%), Gaps = 8/320 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaagcataactcatccagtctaaacttctagaatttgtcatcattttttgccccacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcaaagcataactcatccagtctaaacttctagaatttgtcatcattttttgccccacgt 257

                                                                       
Query: 61  aggagctgtctctttctccgttgcatttcacttgagttccaacttgcaaaagggggtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aggagctgtctctttctccgttgcatttcacttgagttccaacttgcaaaagggggtttt 197

                                                                       
Query: 121 gaatccagattctgtattccatcttgctgtcggtccccagcctagtctcattataaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaatccagattctgtattccatcttgctgtcggtccccagcctagtctcattataaatct 137

                                                                       
Query: 181 gttacccgggttgtttacagcgttaagttgttggtaaaactgctgaagacagatcctagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gttacccgggttgtttacagcgttaagttgttggtaaaactgctgaagacagatcctagc 77

                                                                       
Query: 241 atgagga----tttttgctttcaaacagcgatcagtatttcctgggtacggttgtccagc 296
           |||||||        |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 76  atgaggagacc----tgctttcaaacagcaatcagtatttcctgggtacggttatccagc 21

                               
Query: 297 tagaatccatgtttctcccc 316
           ||||||||||||||||||||
Sbjct: 20  tagaatccatgtttctcccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)