Query= MSMg01no397_a07.b1 MSMg01no397_a07.b1 CHROMAT_FILE:
MSMg01no397_a07.b1 PHD_FILE: MSMg01no397_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:18 2005
(569 letters)
>mm_chr4_76218111_76219081
Length = 971
Score = 1038 bits (537), Expect = 0.0
Identities = 559/567 (98%), Gaps = 2/567 (0%)
Strand = Plus / Plus
Query: 5 gaattctttctcccttgcctattgtggatagatgactgttagatgcttaagaagccctta 64
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctcccatggctattgtggatagatgactgttagatgcttaagaagccctta 264
Query: 65 ttcagccaaactgaacatagctaaaacgaaatctcacatccagcatatgagtgcatgtgt 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 ttcagccaaactgaacatagctaaaatgaaatctcacatccagcatatgagtgcatgtgt 324
Query: 125 attataaagcaaactcaaccaaaacaaattctttatcacaataaaaatgttggtgttaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attataaagcaaactcaaccaaaacaaattctttatcacaataaaaatgttggtgttaca 384
Query: 185 aaacccaaccataaggcagatgtgggccagcacacactcatcatggacagttcagaggga 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 aaacccaaccataaggcagatgtgggccagcacacactcatcatggacagttcacaggga 444
Query: 245 gatgtctgtattttaggtcagctgcggcttaccatgcaaacagctgcagcaaagaatgct 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 gatgtctgtattttaggtcagctgcggcttaccatgcaaacagctgcagaaaagaatgct 504
Query: 305 gatgatatagctgctgttaatactgccttagactgctataaattgtgaggaaaggtaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatgatatagctgctgttaatactgccttagactgctataaattgtgaggaaaggtaaga 564
Query: 365 gaattaaatctaaaaggcagctgttatttatgaggcacttttgattcatgcacccacaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaattaaatctaaaaggcagctgttatttatgaggcacttttgattcatgcacccacaca 624
Query: 425 tttaacatgatcagcagcattgtattgcatagaactccatccctattttttttt--aatg 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 tttaacatgatcagcagcattgtattgcatagaactccatccctatttttttttttaatg 684
Query: 483 tgggtcacaggggaggatgggcagaaggttgcagcctttctgctacctgtgcatttgcaa 542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 685 tgggtcacaggggaggatgggcagaaggttgcagccttcctgctacctgtgcatttgcaa 744
Query: 543 gttttatactattttacttatcaggaa 569
|||||||||||||||||||||||||||
Sbjct: 745 gttttatactattttacttatcaggaa 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 971
Length adjustment: 10
Effective length of query: 559
Effective length of database: 961
Effective search space: 537199
Effective search space used: 537199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_a07.g1 MSMg01no397_a07.g1 CHROMAT_FILE:
MSMg01no397_a07.g1 PHD_FILE: MSMg01no397_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:18 2005
(464 letters)
>mm_chr4_76395001_76395865
Length = 865
Score = 868 bits (449), Expect = 0.0
Identities = 461/465 (99%), Gaps = 1/465 (0%)
Strand = Plus / Minus
Query: 1 agttgtcactggatctgggcatgcttaggatctgacactctgactacccataacttataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agttgtcactggatctgggcatgcttaggatctgacactctgactacccataacttataa 606
Query: 61 tgtgtctaatctgatactatgaaacccaaaccaagacgtgaagttttttttcttttaaaa 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 605 tgtgtctaatctgatactatgaaacccaaaccaagatgtgaagttttttttcttttaaaa 546
Query: 121 agtgaaacacagagcaatcttctttgaattcagtagacatgagaagggagactaggtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agtgaaacacagagcaatcttctttgaattcagtagacatgagaagggagactaggtttt 486
Query: 181 ctgtcaccatatttctgagtgggatgatttgatccgcctcatggttagagccaggtagaa 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 485 ctgtcaccatatttctgagtgggatgatttgatccgcctcatggttagggccaggtagaa 426
Query: 241 agccattccttacaataaagaattatcccatctttcataactggaagatgcaatgtggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agccattccttacaataaagaattatcccatctttcataactggaagatgcaatgtggaa 366
Query: 301 gtatctcatatttgtagcaaattgaggaaaggtgctcagactataatcttagagtatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 365 gtatctcatatttgtagcaaattgaggaaaggtgctcagactataatcttagaatatata 306
Query: 361 ttttt-cccaatgtttggaatctactcataactcaaggaacattggaaattcaaaagtcc 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttttttcccaatgtttggaatctactcataactcaaggaacattggaaattcaaaagtcc 246
Query: 420 ttttagtgatgtcacagaccaaactgaggaacttcatatgaccta 464
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttttagtgatgtcacagaccaaactgaggaacttcatatgaccta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space: 388170
Effective search space used: 388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
