BAC Information

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BAC

Clone NameMSMg01-397B14
Chromosome4 (Build37)
Map Location 123,814,926 - 123,815,226
singlet/doubletsinglet
Overlap genenone
Upstream genePpie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397B14.T7 (MSMg01no397_b14.b1)MSMg01-397B14.TJ (MSMg01no397_b14.g1)
ACCAG497518AG497519
length823798
length of high quality
(start - end)
194 (128 - 321)345 (72 - 416)
definitionCHROMAT_FILE: MSMg01no397_b14.b1 PHD_FILE: MSMg01no397_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:24 2005CHROMAT_FILE: MSMg01no397_b14.g1 PHD_FILE: MSMg01no397_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTACCGCTCGCGGAA
TTCTCTGTACTTTTCTTCATATAACAGNTNGNNGTGGNCTTATGTAAGTA
CAGCATGTAAGGGTTTCCTCTTTCTCCACATCTTCACCAGCATGCGCTAT
TTTTGTTGTTCTTGTCTTCTGGTAACAGCCATTCTTGCTGGAATTAGGTG
ATATACTATTCCTTTGATCTGCATTTGTTTGATAACGTTTAGTCATGTTG
AATATATTTTGTTTTGTATACCATGGGCCATTTCTACACCCCTAAAAAAT
GTCTCCTTGGATTTATTGCTATTTCATTANATTTATTACCTTCTTGAGCA
GGGTTTCTCTGTGTATTCTTGCCTGCTCTGGAACTCGCTCTGTACATCAA
GCTGGCCTCAGACTCCCCCCCCCCCCCCCTGTCTCTGTTCCCCAAATGTT
GGCCACCGTAGACGCCCCCCATCTCCTGTCCGTTTTTTTCCTCTTCTCTA
TCGTTCTATTGCTTTCTTCCTTTCCTTCTTCTCTGCTATCCCTTCCTCTC
TTTTTTTCCCCTTATTTTCATCTCTCCTACCCTCCCCCTCCTTCCTCTTC
TTCCCCATCTTGTCTACCCTCCCTCTTTCTTATCTTTCACCGCCACTTAT
AATCTTTCCTGTATTTCCCCCCCCCCCTTCTTTCTCTTTTCCTATTTCTT
CATCCCCCTCCTCCCCCCGCGTTTCCTTCCCCTTTCTTTTTCTTCCCCTC
CATTTACCCCCTTTTCATTATATCTCCACCCCCCACGCAATCGCTTTATC
CCCCTTCTCCCTCCCCCGTCTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATACTGGCTCAGCCCAGATGAGTCTGAAT
GAGTGAGGAGGGACAGTTTTTCAATATATATGGACAGCAAGAATTTGATT
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGATTTCTCACAGGGTTCATA
CAGTATGGGTATAGGCACATGGTGACTAGCAAAGTTCCTGCTGCCCTGAA
TGCAAGGGCACATGGATGTGCATAAATACACGCTCCTGAAAATACCAGCT
CACTTAGATATGGTCACCCCCCCCCCCCCCATTCTCATCCAGCAACATAC
TTGGCCACATATGTCTTATACATATGTGATCATACCTGCAACTCTTGCTC
ATGTGCAGACACTCCCCCCCCCTCTCATCCTCCCAAATCCCCATTCACCC
TATGTTCTGCTTTCCCCCCCGATTGTCTCCTTTTTTCCACCCGCCTGCCC
CCCCTATTCCGCCGTTCTCCCCCCTTTTCTCGTATCTTTTCCTTCTCCCC
TCCTCCCCACCCTATTTTATTTCTTTCTCATCACTTTCCCATCCTCCGGC
CCGCATCGTTTTTTTTTACTCTCTCCTCTCCCTCTCTCCTCTCCTCTTCC
CCTCCCTTCCCTTTTCCTTTTTTCTCTCTCTTCGCTACGCTCCTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_b14.g1 MSMg01no397_b14.g1 CHROMAT_FILE:
MSMg01no397_b14.g1 PHD_FILE: MSMg01no397_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:24 2005
         (345 letters)



>mm_chr4_123814517_123815261
          Length = 745

 Score =  485 bits (251), Expect = e-141
 Identities = 300/345 (86%), Gaps = 44/345 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactggctcagcccagatgagtctgaatgagtgaggagggacagtttttcaatatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atactggctcagcccagatgagtctgaatgagtgaggagggacagtttttcaatatatat 651

                                                                       
Query: 61  ggacagcaagaatttgattgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ggacagcaagaatttgattgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag 591

                                                                       
Query: 121 aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaaaaagaaagaaag 180
           ||||                                            ||||||||||||
Sbjct: 590 aaag--------------------------------------------aaagaaagaaag 575

                                                                       
Query: 181 aaagaaagaaagaaagaaagaaagaaagagatttctcacagggttcatacagtatgggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aaagaaagaaagaaagaaagaaagaaagagatttctcacagggttcatacagtatgggta 515

                                                                       
Query: 241 taggcacatggtgactagcaaagttcctgctgccctgaatgcaagggcacatggatgtgc 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 taggcacatggtgacaagcaaagttcctgctgccctgaatgcaagggcacatggatgtgc 455

                                                        
Query: 301 ataaatacacgctcctgaaaataccagctcacttagatatggtca 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ataaatacacgctcctgaaaataccagctcacttagatatggtca 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)