BAC Information

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BAC

Clone NameMSMg01-397C09
Chromosome4 (Build37)
Map Location 124,051,950 - 124,052,194
singlet/doubletsinglet
Overlap genenone
Upstream geneMacf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397C09.T7 (MSMg01no397_c09.b1)MSMg01-397C09.TJ (MSMg01no397_c09.g1)
ACCAG497556AG497557
length819793
length of high quality
(start - end)
34 (118 - 151)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no397_c09.b1 PHD_FILE: MSMg01no397_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:28 2005CHROMAT_FILE: MSMg01no397_c09.g1 PHD_FILE: MSMg01no397_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCGACACATCCGCGGAATT
CTCCTTCTTGCCTGAACACTCAGTGTGGCACTTCTGTAAAACTCTGACAC
TGTAGCGTTTGGGTGATTGTCATTGTGTTGAGTAGTGGTCTCGTTGATTT
GTGGNAATCATGTGGTAATCTTAAACCATCCAGAATTACCCAGTAGGGAG
GTACATGGGAGTTGAATGGAAGGGAACTCTTTAAGAGGAGAATTCTTCCT
ACCTGTTATCTGGTGGCCCAGGATCCTGGGCAAATGTCACTATTATTTGC
ACTTGGTGACTGGTTTGTCCTTGTGTACTGGGTTGTTATGTTTGATGCAT
GATGCGTATGTGTCTCTTGCTTGCGGTTCCGCTGCTCCTTAATACGAATG
GCTCGTTAAGCTCTCCCAGACGCTGAGCCGCCTTTAATTCAGTCCTTGCG
TTTGTGAGGCGATCATCCATCTCATTCAGTGTCTTTGCGCGTTAACTTAC
TATGTGAACTTTTTAGGTCTTGTTATGCGCCCCTAATGTTTACTATCTTG
TTCTGTACGCCCCCTGTTTCTTAAATCTTTTCCCCCCCCCCTTTTATGAG
TTTCTTTACATACCCTTTTTCTTTATTCTCCCTCTTTCTTCCTATTTTCT
TCTTTGCATTTCTTCCTCTCTCTTCTCTTTTTCTCTCTCTGTCTATATTC
TCCCTCTTTCCTTCTCCTTCCTTCATTACTTTTCTCCCTTCTTCTATATC
CTCCTTCCGCTTTTCTTCCCCTCTCCTACGCTTTATTTCTCTTTCTTTTT
CCTCTTTTCCTATTTCTAT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGAAGATAGGAAGAGTCTTTACTGCA
AACCAAGCTAACTTCTTGTTTGAGATCCTCAGAAAGCCGAGGTCATGTAT
TTTCAGCCCTTAAGCCGAATTTGTTATTTAAAGAAAAAAATCCATATATG
AAAAATCCATATATGAAAAAAATATCATTTCAATGTCCATCATCTTCTTA
GCAATTATTGGCCGTGCTGGGTGCCTGTCCCCAGCTGCCAGGATGTCTCC
CATACTCCAGGATGGGGGTCTCCTTTTCCTCCCCATCTCCCTACCATTTG
TCATTTCCTGGATCCTCCTGTCCTGCCTCACTCTGTTGAGTTTGTGACAC
TCCCCTGCCACCCTATCTGGTGTTGATACCAGGTTCTCCAGTTCACCTTG
TTCAGGGCTGTGCAGGATCCGATTATGATTTGCTGTCTCCGGAATCACCC
CGCTTTAAACGGCCCACCATTCAGCACTAACCCGCTGTCTATCTATCTTG
TGCCCTTGTTCATGTACAGTTTTTCTTAATTAGTTTCCTTTAATCCAGAC
GCGCTTCTTCTTAAATTTGTTTCTTGTTCTCCACCGTACCCATCCCCTTC
TTTTTTCGTCATCATCTTCTTCTTTTCTTAACACCTTTTTCTCCCCCCCT
CTCTTTTTACTCTCTCTCTTTTATTCCTATTCCTCCTCCCCCCTTACTTT
TTATTTTTTTCCCCCTCTTCCTCACTTTCTTTTCTTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_c09.g1 MSMg01no397_c09.g1 CHROMAT_FILE:
MSMg01no397_c09.g1 PHD_FILE: MSMg01no397_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:28 2005
         (247 letters)



>mm_chr4_124051750_124052396
          Length = 647

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaagataggaagagtctttactgcaaaccaagctaacttcttgtttgagatcctcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaagataggaagagtctttactgcaaaccaagctaacttcttgtttgagatcctcaga 260

                                                                       
Query: 61  aagccgaggtcatgtattttcagcccttaagccgaatttgttatttaaagaaaaaaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccgaggtcatgtattttcagcccttaagccgaatttgttatttaaagaaaaaaatcc 320

                                                                       
Query: 121 atatatgaaaaatccatatatgaaaaaaatatcatttcaatgtccatcatcttcttagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatatgaaaaatccatatatgaaaaaaatatcatttcaatgtccatcatcttcttagca 380

                                                                       
Query: 181 attattggccgtgctgggtgcctgtccccagctgccaggatgtctcccatactccaggat 240
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcattggccgtgctgggtgcctgtccccagctgccaggatgtctcccatactccaggat 440

                
Query: 241 ggggg 245
           |||||
Sbjct: 441 ggggg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)