Query= MSMg01no397_m04.b1 MSMg01no397_m04.b1 CHROMAT_FILE:
MSMg01no397_m04.b1 PHD_FILE: MSMg01no397_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:18 2005
(243 letters)
>mm_chr4_139924214_139924856
Length = 643
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%)
Strand = Plus / Plus
Query: 1 gcaagcatccactctcctctttgactataccgtttgctgttttatacaatgaccctgcct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 gcaagcatccactctcctctttgactataccgtttgctgttttagacaatgaccctgcct 260
Query: 61 gggatgttcttcctactgtctcgctgaaatcctccctgcttctttgctggcgctctcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggatgttcttcctactgtctcgctgaaatcctccctgcttctttgctggcgctctcacc 320
Query: 121 aattgtcctatttgagtcagccttctgacctcccccaaatccttcactttggaacaacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgtcctatttgagtcagccttctgacctcccccaaatccttcactttggaacaacct 380
Query: 181 cttccagaagactgaagatccagcctgccgcagttggagaccttcctcgttcatgggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttccagaagactgaagatccagcctgccgcagttggagaccttcctcgttcatgggaga 440
Query: 241 ggc 243
|||
Sbjct: 441 ggc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no397_m04.g1 MSMg01no397_m04.g1 CHROMAT_FILE:
MSMg01no397_m04.g1 PHD_FILE: MSMg01no397_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:18 2005
(221 letters)
>mm_chr4_140103904_140104524
Length = 621
Score = 362 bits (187), Expect = e-104
Identities = 211/227 (92%), Gaps = 14/227 (6%)
Strand = Plus / Minus
Query: 1 ctatgcaggccctgagagcctcagggatgctgggtgccaggtatccggccctgtgctcca 60
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 375 ctatgcaggccctgagagcctcagggatgctgggtgccaggcatccgggcctgtgctcca 316
Query: 61 cattgtttagctgacttcttcaggccctaagagcatcccagccagatgtcaggtccccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cattgtttagctgacttcttcaggccctaagagcatcccagccagatgtcaggtccccac 256
Query: 121 ttacatacagggagctggtgtatggtgtagggttggagccgaggctagctccatg----- 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttacatacagggagctggtgtatggtgtagggttggagccgaggctagctccatgcaaag 196
Query: 176 --ttttttttgcctcctttctccagctagtaccctgcctctctcgtg 220
||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cc-------tgcctcctttctccagctagtaccctgcctctctcgtg 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 621
Length adjustment: 9
Effective length of query: 212
Effective length of database: 612
Effective search space: 129744
Effective search space used: 129744
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
