BAC Information

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BAC

Clone NameMSMg01-397N07
Chromosome4 (Build37)
Map Location 63,639,313 - 63,639,557
singlet/doubletsinglet
Overlap geneTnc
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N07.T7 (MSMg01no397_n07.b1)MSMg01-397N07.TJ (MSMg01no397_n07.g1)
ACCAG498078AG498079
length798791
length of high quality
(start - end)
176 (122 - 297)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no397_n07.b1 PHD_FILE: MSMg01no397_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:23 2005CHROMAT_FILE: MSMg01no397_n07.g1 PHD_FILE: MSMg01no397_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATATTTGCGGCGCTAAACGACTCCTATTTCGCACCAAGCGCGGAATT
CCCTCCTTTACAAACAACTAGAGAGCTGTTGGCAATCTTCAAAATAAAGT
ACCAGTATTAGGCTTATTACGCTGGCCCTTGTGATAGTTGATTATACATC
TGGGTATAACTATTTGTTACATTTTTGCCTTTGTTGTTTACAAAGCAACT
TTGAATAGAATAAGAGCAAGTCCTTGGGGAAGAGGCATCTAGGTTAATTC
CAGCTTGATTTCTCTAAACCTGGTGTCCAGAGTATGTTATGTCTTCAGTT
AAAGAATCTTGCTTTCATCCTCTGGCACGCAACAAAAGGCCCTGTCTATA
GCCTATATACTACCCCATATTGTTTAGGGCCATCTCCTATAAACCTCTGA
TTAATGACCACCCCCCCCACATTTATTATACAAACGTCATGCCTAATGAT
ATGTATACATCATCACTTCACTTTTATTACTTGTTCCCTTCTCCTTTCTT
TCTTCTATTCCCTCCACCCCTCTCTTCTTTTCTCTCTCTCTCTCCCCTTT
TTTTTCACTTCCCCTCTTCTTCCTTCTTTATACATTTATTCTTCACCCTT
ATCCCCCCCCCTCTTACCCGCTATCCATTCTTTCCTTTTTATCCCCTTCT
CTTATTTTTCCACCCATCCTCTTATCCTTCTTCCTCTTCTTTTCCCTTTC
CTCCACTTCATTTATATATCCATATCTCCCCCCTTTCTCTTCATCTCCTC
CCCCTCTCTTCTTTCTCCTTTCCCTCCTCCTCTCCTCTTCCTTTTCCG
GAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGAGCAGTGGGCATGATATTTTTCTA
CTAAAGAGCTTCCTAGGTGTTTGTTACTTCAGTGTGTAGCTTTCTGCTAT
GGGGTCCTCAAGTCCTGAGCCCTACAACAGATAGCTAAGCACAAAACACC
AGAGTCATACCTATTAAAAAGCTGGAGAGGGGCTGGAGATATGGCATAAC
TCTAAAAGCCTAACTGCACAAATATGAAGGTCTGAGTTTAGATGTCCAGT
ATCCGCATACAAGCTGGTTATATTTTATGACCTGTCTGTAACTCAAGCTC
TCAGGAAGCTGATGAAAGAGATCTCTTCCCCTTCCATGAGCATCAGGTAG
TTAGACCCACTGACCCCCCCCAGCTCTGGTTTTTATTGTGACATCTTGCC
TCTATCTTTTTCCACACTCTCTTTTCGCACTAACACATTTTGTCTTCTTC
CATCCCCCCTCACTTTTTTCTTGTCCTTCCCCCCATTTCCTTCCTACATG
TACCCACTTTTGTGATTACTTCCATCCTCATTCCTCTTCTCTCATCCTCT
CTCATCCCTCCTTTTATAACTCCTCTCTCACTCATTTGTTTCCAACATCC
TTAATTCCCCTCCCCTTGTCCTCTCTTACTTCTTATCCATTCATTTTTTC
AATACATCCCTTCTTTTATTCATTTCTTTCTATTCCTCTTTCGTCCACCG
TACCAACATTCTTCTTCCTATTTCCTCTTTCTCTCTATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n07.g1 MSMg01no397_n07.g1 CHROMAT_FILE:
MSMg01no397_n07.g1 PHD_FILE: MSMg01no397_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:23 2005
         (245 letters)



>mm_chr4_63639113_63639757
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggagcagtgggcatgatatttttctactaaagagcttcctaggtgtttgttacttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggagcagtgggcatgatatttttctactaaagagcttcctaggtgtttgttacttcag 260

                                                                       
Query: 61  tgtgtagctttctgctatggggtcctcaagtcctgagccctacaacagatagctaagcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtagctttctgctatggggtcctcaagtcctgagccctacaacagatagctaagcac 320

                                                                       
Query: 121 aaaacaccagagtcatacctattaaaaagctggagaggggctggagatatggcataactc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aaaacaccagagtcatacctattaaaaagctggagaggggctggagatatggcataacac 380

                                                                       
Query: 181 taaaagcctaactgcacaaatatgaaggtctgagtttagatgtccagtatccgcatacaa 240
           |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 taaaagactaactgcacaaatatgaaggtctgagtttagatgtccagtatccacatacaa 440

                
Query: 241 gctgg 245
           |||||
Sbjct: 441 gctgg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)