ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAAATGTTTCCAATGCTGGATGCTTATGGCTTCTGTCCTGTCTGCC
TCTAAGCAGTATTCTTTGTGTGGCAGGAAAAGGCCATTTACCTCTGGCTA
TGTGGGGTGATGCATACACAGTTAAAAACCAAACATTTTTAGATTGGTAC
AGCTCTATTTTGAACAGAGGATGTTTAAGCAAAGGCTTAGGAGATTTCTG
ACAGTGAAAACCTTAGAATGTTTAAGCTGACAAAGTGACAAAAAAAATCA
CCTGGCTTAACTGTATAGACAGGAGACAGTACAGCTCCAAATGTAGATGG
CTCTTGCCCAGGGTCATATAGCCTGAAGTCCTACAGTATTCTAGTTTTAC
CTTCAAAGAGCTAATAGGGTTCTCATTCTTTCCCTCCTAAGTCTTATGTA
TTTTAACAGACATTTACTTTATCAGGAACACCCCTCTCCTCTAGCACAAA
TCACTCTAGAGTCACTAGTCAGCATTTGTTTTATTGAGAACTTTCTATGA
TCTCTGTTTCATAGTTCAGGTTTGTGAGTTTAAGGTACCTGCCCATAGCA
AACTAGGAACACAGGCAATAAATGGCTGATATTCTCTAATGACCAAACTC
CATAACTCCAAATCTCAGCCATGTATGGATGCAACGCAAGGTCATCTTAA
TGCTCTTTCCATGAGAACAATCAGATTGACCGTACTGGTTAAGATGATGA
TGTTTGAAATGGGAATT

CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCATACTGATTTCCATAGTGGCTGT
ACTAGTTTGCAGTTGCACCAAAAGTGAATGAGGGTCTCTCCAGCACATCC
CCTCCAGAATTTGTGGTCTTTTGTTTTGGTAACCTTTGCCATTCCAACAG
GGGAACTATCTGTCAGAGACACTTTGATTAGCAATTCCCTAACTGCTAAG
TAGTTGAACATTATTTTGAGATATTCTTAGACATTTTTTTCTTTTGAGAA
CTTTCTAAAACCATTTCTTCAGTTGATATTGTTTTGTCTTTTTAGCTATT
GTTATACTTTTGATCATCAAATATAGTAATGTTGATATATATGTGTGTGT
ATATATATGTATATATATACATAAAATGTGAGACTAGTTTTTATTGTGCT
CACAATAGTCTTTGTACATATGTATGCATGTACGTAGGTAGGCATGTAAG
TAACCTGTTTTTACAGATCCTTCATTATGTATATTTGTTCTATCAACCTT
CCCCTCTTTAGTTGCTTCTCTCTCTTTTATTTGTTGAGAATATTGCCCAC
TCATAGTTGTCCCCAGACATACTACTTCCCCCGGTTTTCAGTGCCCAATT
GTTTCTCATATAAAAGAGACTTCTTAAATTTTGCGGTTGTTTATTTCGTC
TCATATCTCCCTTTCTTCTTCTTCGCGTTTTTTTGTATCAACCCTTCTGC
GCCCTTTTCGCACACCCCCTTTCGCGGCCATTTTCTTGTTGCTTTTTTTN

Query= MSMg01no398_b01.b1 MSMg01no398_b01.b1 CHROMAT_FILE:
MSMg01no398_b01.b1 PHD_FILE: MSMg01no398_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:42 2005
         (617 letters)



>mm_chr4_110757170_110758189
          Length = 1020

 Score = 1118 bits (578), Expect = 0.0
 Identities = 606/618 (98%), Gaps = 7/618 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaaatg---tttccaatgctggatgcttatggcttctgtcctgtctgcctcta 61
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattcagaaatgcaa--tccaatgctggatgcttatggcttctgtcctgtctgcctcta 763

                                                                       
Query: 62  agcagtattctttgtgtggcaggaaaaggccatttacctctggctatgtggggtgatgca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 agcagtattctttgtgtggcaggaaaaggccatttacctctggctatgtggggtgatgca 703

                                                                       
Query: 122 tacacagttaaaaaccaaacatttttagattggtacagctctattttgaacagaggatgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tacacagttaaaaaccaaacatttttagattggtacagctctattttgaacagaggatgt 643

                                                                       
Query: 182 ttaagcaaaggcttaggagatttctgacagtgaaaaccttagaatgtttaagctgacaaa 241
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttaagtaaaggcttaggagatttctgacagtgaaaaccttagaatgtttaagctgacaaa 583

                                                                       
Query: 242 gtgac--aaaaaaaatcacctggcttaactgtatagacaggagacagtacagctccaaat 299
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtgacaaaaaaaaaatcacctggcttaactgtatagacaggagacagtacagctccaaat 523

                                                                       
Query: 300 gtagatggctcttgcccagggtcatatagcctgaagtcctacagtattctagttttacct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtagatggctcttgcccagggtcatatagcctgaagtcctacagtattctagttttacct 463

                                                                       
Query: 360 tcaaagagctaatagggttctcattctttccctcctaagtcttatgtattttaacagaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcaaagagctaatagggttctcattctttccctcctaagtcttatgtattttaacagaca 403

                                                                       
Query: 420 tttactttatcaggaacacccctctcctctagcacaaatcactctagagtcactagtcag 479
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 402 tttactttattaggaacacccctctcctctagcacaaatcactgtagagtcactaatcag 343

                                                                       
Query: 480 catttgttttattgagaactttctatgatctctgtttcatagttcaggtttgtgagttta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 catttgttttattgagaactttctatgatctctgtttcatagttcaggtttgtgagttta 283

                                                                       
Query: 540 aggtacctgcccatagcaaactaggaacacaggcaataaatggctgatattctctaatga 599
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aggtacctgcccatagcaaaccaggaacacaggcaataaatggctgatattctctaatga 223

                             
Query: 600 ccaaactccataactcca 617
           ||||||||||||||||||
Sbjct: 222 ccaaactccataactcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1020
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1010
Effective search space:   613070
Effective search space used:   613070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)