Query= MSMg01no398_b11.b1 MSMg01no398_b11.b1 CHROMAT_FILE:
MSMg01no398_b11.b1 PHD_FILE: MSMg01no398_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:44 2005
(571 letters)
>mm_chr4_110428023_110428993
Length = 971
Score = 1050 bits (543), Expect = 0.0
Identities = 561/567 (98%), Gaps = 1/567 (0%)
Strand = Plus / Plus
Query: 5 gaatttattaatttaccttatacatatcacatttagtacactaacctttgaatagagtaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaatttattaatttaaattatacatatcacatttagtacactaacctttgaatagactaa 264
Query: 65 agaaattaatttaaaattgtttttaaatttatttcaatttcatgcttcttcatagcaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaattaatttaaaattgtttttaaatttatttcaatttcatgcttcttcatagcaaac 324
Query: 125 atttatttcttttatgtatcacattaaataccatgcttcagtcttaaaaaatattccttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttatttcttttatgtatcacattaaataccatgcttcagtcttaaaaaatattccttc 384
Query: 185 aaagtgttagccatattttaaaaattacctgattctcagttccccagtatcataattagt 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagtgttagccatatttttaaaattacctgattctcagttccccagtatcataattagt 444
Query: 245 tttcatcttatatattccaaacatattaaaatataatgaacgtatgcaggtactttgtgg 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tttcatcttatatattccaaacatattaaaatagaatgaacgtatgcaggtactttgtgg 504
Query: 305 tttgaatatgctaagatttttgtgttttcttttgcctaagtcctattactctaataaact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgaatatgctaagatttttgtgttttcttttgcctaagtcctattactctaataaact 564
Query: 365 ggatgtttgtcacctctaaaattcatgttgaaatagactttctattatgacagtattttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggatgtttgtcacctctaaaattcatgttgaaatagactttctattatgacagtattttg 624
Query: 425 aggcaagacattaacaggtaactaggctgggaaaggctgggaagggcccaccctcatgaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggcaagacattaacaggtaactaggctgggaaaggctgggaagggcccaccctcatgaa 684
Query: 485 tgatactattccatcataaaagggagtgtttagtcatctcttgctgtgttggtcaatttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgatactattccatcataaaagggagtgtttagtcatctcttgctgtgttggtcaatttt 744
Query: 545 ttttgtctacttgacacaagctagggt 571
||| |||||||||||||||||||||||
Sbjct: 745 ttt-gtctacttgacacaagctagggt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_b11.g1 MSMg01no398_b11.g1 CHROMAT_FILE:
MSMg01no398_b11.g1 PHD_FILE: MSMg01no398_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:44 2005
(557 letters)
>mm_chr4_110497265_110498221
Length = 957
Score = 1021 bits (528), Expect = 0.0
Identities = 550/559 (98%), Gaps = 6/559 (1%)
Strand = Plus / Minus
Query: 1 tggattcatgaacagagaacgtgagctgagcatgagcattgatcactctcattttcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tggattcatgaacagagaacgtgagctgagcatgagcattgatcactctcattttcctaa 739
Query: 61 caaacatacaatgatcagcttactcaagctccagaaggagccttgacttttctgccataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caaacatacaatgatcagcttactcaagctccagaaggagccttgacttttctgccataa 679
Query: 121 tagattttactcttgaactgtgagatgaaataagttctccctcccttgaattgcttttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagattttactcttgaactgtgagatgaaataagttctccctcccttgaattgcttttgt 619
Query: 181 tggggcatttttatcccagcaattgaaaattaggtagagcatgcagcactagatatatca 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 618 tggggcatttttatcccagcaattgaaaaataggtagagcatgcagcactagatatatca 559
Query: 241 tttanatgntt--atatttgccttaaacaacaggattcatgtgactgtaccatagttcta 298
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttatatg--taaatatttgccttaaacaacaggattcatgtgactgtaccatagttcta 501
Query: 299 cattatgtaggtgaaaataacacttaactcatgttacagtaagaacacaatacatggaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cattatgtaggtgaaaataacacttaactcatgttacagtaagaacacaatacatggaaa 441
Query: 359 ataacatatttcatctgttaattaagaattattaatttattaaagagacatttattgcat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ataacatatttcatctgttaattaagaattattaatttattaaagagacatttattgcat 381
Query: 419 tctatgtatcacgcataatagcgaagactaggaacacaatgatgaacaagaaagacctga 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 tctatgtatcacgcataatagcgaagactaggaacacaatgatgaaaaagaaagacctga 321
Query: 479 ccctgttctcattgcttataggtaatgtcactgcaccatgaaaactctagataacttctt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccctgttctcattgcttataggtaatgtcactgcaccatgaaaactctagataacttctt 261
Query: 539 ttttcttaa-atatatttt 556
|||| |||| |||||||||
Sbjct: 260 tttt-ttaatatatatttt 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
