Query= MSMg01no398_c03.b1 MSMg01no398_c03.b1 CHROMAT_FILE:
MSMg01no398_c03.b1 PHD_FILE: MSMg01no398_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:47 2005
(244 letters)
>mm_chr4_149892801_149893446
Length = 646
Score = 443 bits (229), Expect = e-129
Identities = 239/243 (98%), Gaps = 2/243 (0%)
Strand = Plus / Plus
Query: 1 tagctagcagaagactggtttccaagtagctaggatggaggtcataaagctcaagcccac 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagctagcagaagactggcttccaagtagctaggatggaggtcataaagctcaagcccac 260
Query: 61 agtgacacacccactccaacaaggccacacttccagatagtgccactccctatgccaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgacacacccactccaacaaggccacacttccagatagtgccactccctatgccaagt 320
Query: 121 gtattcaaaccacctcaaggggtgtggcgatttctagttccaaataaggtactacagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattcaaaccacctcaaggggtgtggcgatttctagttccaaataaggtactacagagg 380
Query: 181 cccctctgtgacactg--cgcacagctccttctcacttgatttcatgggtgttcactagt 238
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccctctgtgacgctgtgcgcacagctccttctcacttgatttcatgggtgttcactagt 440
Query: 239 aag 241
|||
Sbjct: 441 aag 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space: 149695
Effective search space used: 149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no398_c03.g1 MSMg01no398_c03.g1 CHROMAT_FILE:
MSMg01no398_c03.g1 PHD_FILE: MSMg01no398_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:47 2005
(218 letters)
>mm_chr4_150119138_150119755
Length = 618
Score = 391 bits (202), Expect = e-113
Identities = 214/218 (98%)
Strand = Plus / Minus
Query: 1 tttggatgagacacaatcaatcttttccaggtgacaattcattttgtcaactgaagttgc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttggatgagacacaattaatcttttccaggtgacaattcattttgtcaactgaagttgc 359
Query: 61 tcttaaggggacacattgaaaggttttcctatgtagcccaggctcctcctaccccatgtt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 358 tcttaaggggacacattgaaaggtcttcctatgtagcccaggctcctcctaccccatgtt 299
Query: 121 gctttaaacactgatttaggatttatttgtagtgtatgtgtgtgagtattttgcttgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gctttaaacactgatttaggatttatttgtagtgtatgtgtgtgagtattttgcttgcac 239
Query: 181 ataagcacagcacctatgtgcagggtcattggagccca 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ataagcacagcacctatgtgcagggtcattggagccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space: 127281
Effective search space used: 127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
