Query= MSMg01no398_d01.b1 MSMg01no398_d01.b1 CHROMAT_FILE:
MSMg01no398_d01.b1 PHD_FILE: MSMg01no398_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:51 2005
(479 letters)
>mm_chr4_30441953_30442831
Length = 879
Score = 739 bits (382), Expect = 0.0
Identities = 460/504 (91%), Gaps = 29/504 (5%)
Strand = Plus / Plus
Query: 5 gaattcttatacctttacctctcttctaacctgtattttgccctaatgccttctatccct 64
|||||||||||||| |||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct: 178 gaattcttatacctctacctctcttctaacccatattttgtcctattgccttctatccct 237
Query: 65 caatactaggtaggacagaaagaaggatagagggcaaaggggatgtagacttctttagac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 caatactaggtaggacagaaagaaggatagagggcaaaggggatgtagacttctttagac 297
Query: 125 tgcttctttctgatt---------------------------acaatttcagtcttcaga 157
||||||||||||||| ||||||||||||||||||
Sbjct: 298 tgcttctttctgattcatggcaatgagttccttagggtaagtacaatttcagtcttcaga 357
Query: 158 atagctccaatttcttcacatccatttgctcacaaatacttgagaagccacaaccatagt 217
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 358 atagctccaatttcttcacatccatttgctcacaaatacttgagaagccacaatcatagt 417
Query: 218 aatcagaagcagtagatggagtagccgctaccacaggcccccttaggactcttagggtgt 277
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct: 418 aatcagaagcagtagatggagtagcagctaccataggcccccttaggactcttatggtgt 477
Query: 278 cctttgcagattcgccagaattaaactatctgccactgaccaaatcaggctcctgttagt 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cctttgcagattcgccagaattaaactatctgccactgaccaaatcaggctcctgttagt 537
Query: 338 acaggaagtaaatcatagtctttgatccaatactgggattaaaacaaaacgtattcacat 397
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 538 acaggaagtaaatcatagtctttgatccaatattgggatcaaaacaaaacatattcacat 597
Query: 398 c--gtaacttggtttttctaaaaaatcctaattctcacaacacacatctaccatatcttt 455
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 598 aaagtaacttggtttttctaaaaaatccaaattctcacaacacacatctaccatattttt 657
Query: 456 gttatatagtggtcaatggatggg 479
||||||||||||||||||||||||
Sbjct: 658 gttatatagtggtcaatggatggg 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_d01.g1 MSMg01no398_d01.g1 CHROMAT_FILE:
MSMg01no398_d01.g1 PHD_FILE: MSMg01no398_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:51 2005
(455 letters)
>mm_chr4_30626484_30627338
Length = 855
Score = 754 bits (390), Expect = 0.0
Identities = 405/410 (98%)
Strand = Plus / Minus
Query: 46 tttcagaatattataggtattttaaaatatttttgtgtatgttgcagcgaactatcaaaa 105
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 855 tttcagaatattataggtattttaaaatatttttgtgtatgttgcagaaaactatcaaaa 796
Query: 106 tccaataaaattgaaaaaaggcatgtcattttttgccgttaaaatacattaccgtatttc 165
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 795 tccaataaaattgaaaaaaggcatgtcattttttgccgtcaaaatacattactgtatttc 736
Query: 166 ctcatatacacatctataattgagaacacacacacatgcagacatgcacactcacacaca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ctcatatacacatctataattgagaacacacacacatgcagacatgcacactcacacaca 676
Query: 226 cagacttacacacatacacatagagtcatttattaatgctttagaaaatatgtaaattct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cagacttacacacatacacatagagtcatttattaatgctttagaaaatatgtaaattct 616
Query: 286 tataatatctgtcattataataagccattatgtacttttggctttataagtaatattttg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tataatatctgtcattataataagccattatgtacttttggctttataagtaatattttg 556
Query: 346 atgatcattgctatgcaaaatttggcccacatatctattatatcatcattgtaaaattgc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgatcattgctatgcaaaatttggcccacatatctattatatcatcattgtaaaattgc 496
Query: 406 agtagaatttccagacaaatgatattaacttccagcctctttgattcgta 455
||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 agtagaatttccagaaaaatgatattaacttccagcctctttgattcgta 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
