BAC Information

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BAC

Clone NameMSMg01-398E11
Chromosome4 (Build37)
Map Location 116,249,303 - 116,249,707
singlet/doubletsinglet
Overlap geneGpbp1l1
Upstream geneLOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69
Downstream geneLOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398E11.T7 (MSMg01no398_e11.b1)MSMg01-398E11.TJ (MSMg01no398_e11.g1)
ACCAG498418AG498419
length772808
length of high quality
(start - end)
408 (74 - 481)230 (70 - 299)
definitionCHROMAT_FILE: MSMg01no398_e11.b1 PHD_FILE: MSMg01no398_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:58 2005CHROMAT_FILE: MSMg01no398_e11.g1 PHD_FILE: MSMg01no398_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATTCTTTACCCCCATGTCAAAGGGCAGACGTGACCCTAACAAGTTGT
CTCCTGACCTGCACATTCACTGTTCCTATACACAGACTACAAAATACACA
CTAGCTTACAAAATAAGAATATAAAGGCGGGTGGAGACAGATGGCTGAGT
AGTTAAGAGCAGATGCTGCTCTTGCAGAGGACTTGCCTTCAGTGTCTAGC
ATCCACATCAAGTGGCTAACAACCTCCTGAAAATCCAGCTTCAGGAGGAT
CTAAGCCAGCTGTCCTCTTGGCACACAAGCATACATATAATTACAAAGGA
ATGATCATGATTGGGCATGGTGGTGCACACCTTTATCTTAGCACTTGGGA
GTCAGAGACAAATGGATCTCTTGAACTTGAGGTCAGCTTGGTGTACATTG
TGAGTTCCACGTCTTATAGCTAGGACTACCAGAGATAACAAATAACCTAA
GGTCTAAGAGGGTATCTAAAGTCATTTAAAGATAACTATAATGGGTTACA
AAGTATTACCCAGTTTAATCAGTTACTTACTTGCTATAATGGAGTGATAG
AAACAACTTTGCCGAATTATTTGCTTTTTGTGGGTTTTCCAGGGTATGGG
TGGAATTTTTTAACCACAGGGGGGGGGGGCTATATCCCCCCTTGGTTAAG
TCCTCCTAAAAAACATTCTTTTCGGGTTCCTTCTTTCTCCACCCCTTTGG
GAACATTTGGCCACCCTTTTCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXACAAAACTTGAGGNGAACTAT
AGAAGTTACCGCAAAATTCAGCACCTTCTGCTCTCCATAGGCACCAGGCA
TGCATGTGGTGCATAGACATACATGCATATAAAACACCCATACATATAAA
CGAATTTACAAAGACTAAACTTGTAATTATGAAAGGATATGTGACATTTC
ATACCACTTTTTTTTGGGGGTGGGGGTTCGAGACAGGGTTTCTCTGTATA
GCCCTGGCTGTCCTGGAACTCACTTTGTATACCAGGCTGGCCTCAAACGC
AGAAATCCTTTCGTCACTGCCCCCCAAGAGCTGGGATTAAAGGCATGTAC
CTATTATTCTCGTCTCTCATACCACTTTTTAAAATAAAGATTCATTCTGC
GTGTGTATGTGCGTCTGCATCGAGTGCATGCCTCATTGTGCTTACGTGCT
CCGCATAACCCAGAACGTGGTGTTATATCCCCTCTGACCTGCATTCATAC
GTCGCCCTATCCTGACCTCCATCCCCTTGTCCCTCCTCCCCCCTATCCTT
TTCTTTTACCCCCTTCTCTCATTCTTTCCCAACCGTCCACCTACTACCCC
TGCTCTACCCCCTTTTCTTATATATTCTAGCCTCCCACTCCCCTTTATTC
TCTAAACTCCCTTTTCTTACTTTTTCCCCATCCTCTATTACCCCGTTTCC
CCCCTTCCTTTCCCTCCCACTTTTTCATCTCAATCACCTCTAAGACCTTC
CATCTCACTATCATCCCCCACCCTCCTTCTACCATTCCTTTCTACATCTT
CTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_e11.b1 MSMg01no398_e11.b1 CHROMAT_FILE:
MSMg01no398_e11.b1 PHD_FILE: MSMg01no398_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:58 2005
         (408 letters)



>mm_chr4_116249103_116249910
          Length = 808

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%), Gaps = 1/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcagacgtgaccctaacaagttgtctcctgacctgcacattcactgttcctatacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggcagacgtgaccctaacaagttgtctcctgacctgcacattcactgttcctatacac 260

                                                                       
Query: 61  agactacaaaatacacactagcttacaaaataagaatataaaggcgggtggagacagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agactacaaaatacacactagcttacaaaataagaatataaaggcgggtggagacagatg 320

                                                                       
Query: 121 gctgagtagttaagagcagatgctgctcttgcagaggacttgccttcagtgtctagcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgagtagttaagagcagatgctgctcttgcagaggacttgccttcagtgtctagcatc 380

                                                                       
Query: 181 cacatcaagtggctaacaacctcctgaaaatccagcttcaggaggatctaagccagctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatcaagtggctaacaacctcctgaaaatccagcttcaggaggatctaagccagctgt 440

                                                                       
Query: 241 cctcttggcacacaagcatacatataattacaaaggaatgatcatgattgggcatggtgg 300
           || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaca-ggcacacaagcatacatataattacaaaggaatgatcatgattgggcatggtgg 499

                                                                       
Query: 301 tgcacacctttatcttagcacttgggagtcagagacaaatggatctcttgaacttgaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcacacctttatcttagcacttgggagtcagagacaaatggatctcttgaacttgaggt 559

                                                         
Query: 361 cagcttggtgtacattgtgagttccacgtcttatagctaggactac 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagcttggtgtacattgtgagttccacgtcttatagctaggactac 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)