BAC Information

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BAC

Clone NameMSMg01-398I01
Chromosome4 (Build37)
Map Location 118,755,179 - 118,929,782
singlet/doubletdoublet
Overlap geneSlc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833
Downstream geneYbx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398I01.T7 (MSMg01no398_i01.b1)MSMg01-398I01.TJ (MSMg01no398_i01.g1)
ACCAG498589AG498590
length798740
length of high quality
(start - end)
246 (75 - 320)246 (79 - 324)
definitionCHROMAT_FILE: MSMg01no398_i01.b1 PHD_FILE: MSMg01no398_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:15 2005CHROMAT_FILE: MSMg01no398_i01.g1 PHD_FILE: MSMg01no398_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,929,539 - 118,929,782)(118,755,179 - 118,755,424)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXATAGATCGNGACCCGCGGNAAT
CCTGTGTTACTAGCTNAACAAGCAGGAGACAGCAGNCAAAGTACAGAGAC
CTAAAGAACCAAGTAGGGAAGCTCAGCTCTGCCTGGGCCGGCCAGCCACA
AAAGCTGGGCTAGCTGCATAGTCAAGAGGGGAGAGGAAGCTGGGCACTCA
CCAGCCAAGAGGAAGAGAGCACCTCCGGAGATGGCCACACGGCTCTTGGC
AGTGGGGTTACTGTCTCCAACCCGAGTGCACTTCATGCCCACGACACTGA
GCACCATGGCCACAAAGCTTTTTTTTACAGCCACGACCATCAGGGTTCGT
GCTGACTGGATATGACCTGAGGCAGGCTAAGAAAGGTCTGAGCACGAGCG
GGGAGCTCGGACAGGCCCATTGGCCTGTTGATTTTCTAATTTTGTGCCCC
ATCTTTCTTCCTCCCACCCTCCTTCCCCCCCTTATTATTCACACCTTTCC
CTCTTTTTCTTGACCTCCCCCTACCCCTCTCTCTGATCTTATTGTACACT
TGATTCCCCTCCTTTTCTTGCTTTCTGTTATGTCACTCTCCTGTTTTTTT
TTCTTGCACGCCACTCCCTACAACGGAATTTCTCCCCCCACCCCATTCTC
ACTATCTATCTTTCCGGCCGTCCTACAATTTTTCATTATCGCTCTCTATA
CTCAGACCCCTTCTCTTCTCTTTCCACACAATCCCACCTTATTACACCTT
TCCCCTTCCGTCCTCTTAATTTTAATATGTCCCTCCCTCCCCGCCCTT
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCCGNAATCCCCAACATTAGCCTCCCCTCATC
CATGAGGTTGGTCCATTGTGACTACGCTCGTCATAATACCTCTGAGCTTT
CTGTTGATGACCCATGCATATGATTACACTAATACCCATCTGACTGAATC
AGCCCAAATGGCTGGCCACTTGTTTCTTGCCAACTAGCAGCTCTGTACTA
GAAACTGTCAGTTGGAGTTCTAGCTCATGACTAAGGGTCAGGCTAAGATA
GGACTTAGGATTCTGGCCACGAAAGATTTTTCTCAAGCTACTACTTGGCT
TGTGTGTGATACTCCATGGGTAAGTGATCAGGATATGTTGTCAAATAAAG
AAATGAATGAAAACCAGCTTAGACGAGAGGAGTCTGTTTTTGGCTTCCGG
TGACTCAGCAGATGTTATCAGGAATGTGGAAGTGGGTCTCTCCTGGATTT
GCTCTGACCTCTGCAGGGTCATACACAGGCTTTCAGTCACCCATCAGACA
AGGACTTTCTTTCTTCCTCTGTACCATTCCACAGCAGGGGAATTCTCCCT
AGCCACAGCCCCAGTAAAACAAGAAGCCTACTTCTTCTTTTCTCTCAAAA
GCTACAAACTTCCTTTTTCCTTGGTTTCTCAATTTGGTTCAAGGGCCAAA
AATTTTGAATTGGCTTGAAATCCAATTAACCCTTTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_i01.b1 MSMg01no398_i01.b1 CHROMAT_FILE:
MSMg01no398_i01.b1 PHD_FILE: MSMg01no398_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:15 2005
         (246 letters)



>mm_chr4_118929339_118929984
          Length = 646

 Score =  435 bits (225), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagacagcagncaaagtacagagacctaaagaaccaagtagggaagctcagctctgcct 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggagacagcagtcaaagtacagagacctaaagaaccaagtagggaagctcagctctgcct 385

                                                                       
Query: 61  gggccggccagccacaaaagctgggctagctgcatagtcaagaggggagaggaagctggg 120
           ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 384 gggccggccagccgcaaaagctgggctagccacatagtcaagaggggagaggaagctggg 325

                                                                       
Query: 121 cactcaccagccaagaggaagagagcacctccggagatggccacacggctcttggcagtg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactcacctgccaagaggaagagagcacctccggagatggccacacggctcttggcagtg 265

                                                                       
Query: 181 gggttactgtctccaacccgagtgcacttcatgcccacgacactgagcaccatggccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggttactgtctccaacccgagtgcacttcatgcccacgacactgagcaccatggccaca 205

               
Query: 241 aagc 244
           ||||
Sbjct: 204 aagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no398_i01.g1 MSMg01no398_i01.g1 CHROMAT_FILE:
MSMg01no398_i01.g1 PHD_FILE: MSMg01no398_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:15 2005
         (246 letters)



>mm_chr4_118754979_118755624
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaacattagcctcccctcatccatgaggttggtccattgtgactacgctcgtcataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaacattagcctcccctcatccatgaggttggtccattgtgactacgctcgtcataata 260

                                                                       
Query: 61  cctctgagctttctgttgatgacccatgcatatgattacactaatacccatctgactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctgagctttctgttgatgacccatgcatatgattacactaatacccatctgactgaa 320

                                                                       
Query: 121 tcagcccaaatggctggccacttgtttcttgccaactagcagctctgtactagaaactgt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagcccaaatggctgggcacttgtttcttgccaactagcagctctgtactagaaactgt 380

                                                                       
Query: 181 cagttggagttctagctcatgactaagggtcaggctaagataggacttaggattctggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttggagttctagctcatgactaagggtcaggctaagataggacttaggattctggcc 440

                 
Query: 241 acgaaa 246
           ||||||
Sbjct: 441 acgaaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)