TTTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCANACCCTTCCCCTCATGCATGCACATCAAGCACCATACTCAC
TGAGCCATCTCCCCGAGTCCCTGAATCCATATTCTCAAGCTGTTTAGCTG
AAGATATTTTATTAAGACATGTTTATACTTTTCATGTACAATCACAAATG
CCACTGGTTTGTAGTACTATACATCCACTATTAACTACAAGTAGTATTTC
TACTTCATAATACAAATGATCTCAAGTCTAAATTCCAATGTCTACAATGA
TGTGTTTATGCTATAAAGTTGTCAGAAACCTAGGGAAAAAAAATGTAAAA
AGTTAAGCCTCAGAGGGGGAAAAAAACTGAATTATAACCAGAAGTCTGCA
TGTTACTTAAAATGTGATAAGAACTGGAGTTGCTTAACCAAACCTTTTAA
TAATACCTTCTATAACTATACTCAACAAAAATCACTGAAACAAATAAATC
TGTAGCTAATCCAGTGAGAAATATTGATCACATTTTATAGGAAACCCACA
ATAAACAACGAATCTTATTTATCTAACCCTCCAGGAACCAATTCCTATCA
GATAGAAAACCTTAACTGAAAAGATTTAAGTGAGGCAGAGCCTTTCTCGT
GCAGGCTCAAAAAAAGAAGCACTGTCCCTTTAAATGTAAAGACCCGCTTG
CTCTAGGTACGATTACCCCCAAGGAAAAGCTTTGTAACTCTCACCCCCC

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAGATCAGTCTGGCGGTTCTTTTTTATTACTGGATATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACCACGCTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGTAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACTG
AAGATGTGGTACTTCTACACCATGGAGTACTACTCAGCTATTAAAAAGAC
TGATTTTATCAACTTCCCTGGTCCAATGGATGGCCCTGTAGCGTTCTCTC
CCTGCGTGTTGCTTCCTCTTTCCCCATAGGAATTTCTACTTATATGGACT
TCTTGTATCTTTTGCATATTTTTCCTTCAACCTTTAAGATTCCTTAAATA
TCTGAAACCGCCTTCTTTCTATTTCACTTGTCCCCTTTAGTATACACTTG
CTCTATCCTCATTTGCTCCTCTG

Query= MSMg01no398_j18.b1 MSMg01no398_j18.b1 CHROMAT_FILE:
MSMg01no398_j18.b1 PHD_FILE: MSMg01no398_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:24 2005
         (531 letters)



>mm_chr4_84282421_84283350
          Length = 930

 Score =  975 bits (504), Expect = 0.0
 Identities = 521/527 (98%), Gaps = 1/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcanacccttcccctcatgcatgcacatcaagcaccatactcactgagccatctcc 64
           ||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaacccagcccctcatgcatgcacaccaagcaccatactcactgagccatctcc 264

                                                                       
Query: 65  ccgagtccctgaatccatattctcaagctgtttagctgaagatattttattaagacatgt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 ccgagtccctgaatccatattctcaagctgtttagctgaagatattttattaaggcatgt 324

                                                                       
Query: 125 ttatacttttcatgtacaatcacaaatgccactggtttgtagtactatacatccactatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatacttttcatgtacaatcacaaatgccactggtttgtagtactatacatccactatt 384

                                                                       
Query: 185 aactacaagtagtatttctacttcataatacaaatgatctcaagtctaaattccaatgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aactacaagtagtatttctacttcataatacaaatgatctcaagtctaaattccaatgtc 444

                                                                       
Query: 245 tacaatgatgtgtttatgctataaagttgtcagaaacctagggaaaaaaaatgtaaaaag 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 tacaatgatgtgtttatgctataaagttgtcagaaacctagggaaaaaaa-tgtaaaaag 503

                                                                       
Query: 305 ttaagcctcagagggggaaaaaaactgaattataaccagaagtctgcatgttacttaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttaagcctcagagggggaaaaaaactgaattataaccagaagtctgcatgttacttaaaa 563

                                                                       
Query: 365 tgtgataagaactggagttgcttaaccaaaccttttaataataccttctataactatact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtgataagaactggagttgcttaaccaaaccttttaataataccttctataactatact 623

                                                                       
Query: 425 caacaaaaatcactgaaacaaataaatctgtagctaatccagtgagaaatattgatcaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caacaaaaatcactgaaacaaataaatctgtagctaatccagtgagaaatattgatcaca 683

                                                          
Query: 485 ttttataggaaacccacaataaacaacgaatcttatttatctaaccc 531
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttttataggaaacccacaataaacaacgaatcttatttatctaaccc 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space:   479320
Effective search space used:   479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)