BAC Information

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BAC

Clone NameMSMg01-398O10
Chromosome4 (Build37)
Map Location 127,788,697 - 127,959,514
singlet/doubletdoublet
Overlap gene4930465A12Rik, Hmgb4, 4930546G22Rik
Upstream geneZmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296, LOC635169
Downstream geneZscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398O10.T7 (MSMg01no398_o10.b1)MSMg01-398O10.TJ (MSMg01no398_o10.g1)
ACCAG498895AG498896
length767753
length of high quality
(start - end)
174 (75 - 248)193 (129 - 321)
definitionCHROMAT_FILE: MSMg01no398_o10.b1 PHD_FILE: MSMg01no398_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:46 2005CHROMAT_FILE: MSMg01no398_o10.g1 PHD_FILE: MSMg01no398_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,959,341 - 127,959,514)(127,788,697 - 127,788,886)
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAANTACGGAGGCGN
GGAATTCAGCGGTCACGCCAGCCAGAGGGAAGAGGTTTAAGTGGCTCTCC
ACCTCCATCAGTTCCTCGTTTCGGTAGCCTGTTCTGGGACATCTTCCTTC
CATTCTCTATCTGACTACTTCTTACTGGCAGGGAACCAGAGCCTCTGTCA
CCGTAAATTTAAGGGGCACCATTTCTTGGGCTGGAGTTTAGGACTGAATA
AGGAGAAAAAAGCTAAGCATATGCATTTGCACTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC
CTGACTACTGCTGTGCATCCATGATTTTCCTGTTTAGATGGACTGTACCC
TTCTACTGCTTGCCCCATTACTCCCTTTCTCCCTGAAATCTCTTCTTCTA
TGTGTTTCTTTTACCGTCTTCACTATCAATGTCTGCCTGCTGTTCATAAT
TATCCGTCCCTTTGATTTTTTCGTTGTTTTGCTTTTCCCCTGCTTTTTCC
CCCTTTCGTCCCTTTTGTTCTTTCTTGCCCCTTTTTTGCCCTTTCCCCCC
CCATTTTTCCTTCTTTTTCATTCTCCCCCCCACTATCCCCCCTTTCCTCC
CCTTCTTCCCTTTTTTTCCTTTTTTAATCCCTCTTTCTCTTTCTTCTACT
TTTTTTCCCCCCCTTTCCCCTATTCTTATTTTTCTCCCTCCGCCAATCTC
TCTTTTGTTCCCTTTTG
CCCTCCCCTCGATGATAGNGGGAGGCCTGGNGGNCGCCCTTTCATACCAG
TGTTAGGTGAACTATAGTTGGCAACAACGCAATCTCTCCCAGGGCCTTCG
GGGGGATGAGAGGAGGTAGGGTGAGTCTCAAAAAGTGGATGAAGGGCAAC
GATGAACAAGAGACTGAGCAATTTCACACCACCTGGGGACAGTTAGGTCT
CTGGTGGGAGCTGTCATACCTGGATGTCCAATGGCGGGAAAACGTGTCCT
GATTGTGTCCCCTGAGGCCCAGTACTCATAGATAAATAGATAATGCATGT
ATGTATGTATGTATGTATTTACGTACTTTTACACACACACATGAGTGCAC
ACACACACACACATTTTTTCTCCCCCTTACTTTTTATGGATATATGATAC
ACTATCTTTGACTCTGTAATGTTCCCCCCTCTTTGTTTTTAGTTCCTGAG
CTGTCACATTTTTGTTATGATTATCCCTCTATCATGTGGTGTATATCGTG
TCTGTTTATCCCCCTCTTGAAAACTCTTTTGGAACGATATTAACGCTAAA
TTCTTTTTTCTTCTTCACCCCCCCCACCTGCTTCTCTCTCTCTCCCCCTT
CCACTTTTTCTCTTGTCATCTCCTTTACCTGATTCTTTTTCTCACTTAAA
CTCAACTCTCTAGTTCTCACTTCTTTTTTTTTTTTTTCCCTTTTCTTTCT
ATCTCTCTTTTTTCCTTTTTTCTCTTTTTTCTTTTGTTTTCCCTCTTTCC
TAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_o10.b1 MSMg01no398_o10.b1 CHROMAT_FILE:
MSMg01no398_o10.b1 PHD_FILE: MSMg01no398_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:46 2005
         (174 letters)



>mm_chr4_127959191_127959764
          Length = 574

 Score =  329 bits (170), Expect = 7e-95
 Identities = 173/174 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagggaagaggtttaagtggctctccacctccatcagttcctcgtttcggtagcctgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagggaagaggtttaagtggctctccacctccatcagttcctcgtttcggtagcctgttc 265

                                                                       
Query: 61  tgggacatcttccttccattctctatctgactacttcttactggcagggaaccagagcct 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgggacctcttccttccattctctatctgactacttcttactggcagggaaccagagcct 205

                                                                 
Query: 121 ctgtcaccgtaaatttaaggggcaccatttcttgggctggagtttaggactgaa 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctgtcaccgtaaatttaaggggcaccatttcttgggctggagtttaggactgaa 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no398_o10.g1 MSMg01no398_o10.g1 CHROMAT_FILE:
MSMg01no398_o10.g1 PHD_FILE: MSMg01no398_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:46 2005
         (193 letters)



>mm_chr4_127788497_127789089
          Length = 593

 Score =  337 bits (174), Expect = 4e-97
 Identities = 186/190 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaagtggatgaagggcaacgatgaacaagagactgagcaatttcacaccacctgggg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 caaaaagtggatgaagggcaacgatgaacgagagactgagcaatttcacaccacctgggg 260

                                                                       
Query: 61  acagttaggtctctggtgggagctgtcatacctggatgtccaatggcgggaaaacgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagttaggtctctggtgggagctgtcatacctggatgtccaatggcgggaaaacgtgtc 320

                                                                       
Query: 121 ctgattgtgtcccctgaggcccagtactcatagataaatagataatgcatgtatgtatgt 180
           |||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 321 ctgaatgtgtcccctgaggcccagtactcatagataaatagattatgtatgtatgtatgt 380

                     
Query: 181 atgtatgtat 190
           ||||||||||
Sbjct: 381 atgtatgtat 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)