CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGA
ATTCCTCTTTTGCACTTTTGTAACCTTCCTTCTATCATGCAGTCATTTGT
GTTCTCAGTTGGGAGCTTGTTCTCTTTTTGATTTGTTTGAACATACTCAC
AATCATTGTCTTGAATTCTGTGTATGGAGTTTGGTCTAACTCACTCATAC
TGGGTACCATTACATCAAGAATAGATTGTTTTGAAGGAGTTATATTCTAC
ATGTTTTCAGTGATATTGCATTATGACTCTTACATCTTGTATTATTTCTT
TGCTTAAGTTGATTTTATCAGTGATATTATTTTAGTTGGAGAATTTGCAG
TGTAGAAGTGGAATGTAGATGTGATAAAGTTGATGAGTATAGCTCAGAAA
ATACTTTCTCAACTAGGAGCTCAGGGTGTATGTTACAACTCTACATTATT
CCCTGGTATATATTAATAGCAACAACAACCACAGTTGTGGATATCCCCAT
TATTAGATAGCTGTACCAGCCAATGAAAAACAGTGAGAACTATGACTTCA
ACAACCGTTGAAAAGTAAAACAGACAGACAAAGCACGGTAGGAAGGAGCA
GATTCAGATTTGATTTACTATGTTTAAGGATGGGAGTAAAATTGGGTGGG
AGAGGCTAATTATAAACATTATAACAACTTCTAAAATAAAAATATGAGAT
TGAAAAATTTGCTTGGAAGGGCAGTTTT

TCTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACA
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCAC
TGATAAGTGGATATTATCCCCAAACCTAGGATACCCAAGATATAAGATAT
AATTTGCTACACACATGAAACTCAAGAAGAATGAA

Query= MSMg01no399_b03.b1 MSMg01no399_b03.b1 CHROMAT_FILE:
MSMg01no399_b03.b1 PHD_FILE: MSMg01no399_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:59 2005
         (677 letters)



>mm_chr4_80624286_80625362
          Length = 1077

 Score = 1272 bits (658), Expect = 0.0
 Identities = 667/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcctcttttgcacttttgtaaccttccttctatcatgcagtcatttgtgttctcag 67
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattcctcttttgtacttttgtaaccttccttctatcatgcagtcatttgtgttctcag 818

                                                                       
Query: 68  ttgggagcttgttctctttttgatttgtttgaacatactcacaatcattgtcttgaattc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ttgggagcttgttctctttttgatttgtttgaacatactcacaatcattgtcttgaattc 758

                                                                       
Query: 128 tgtgtatggagtttggtctaactcactcatactgggtaccattacatcaagaatagattg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tgtgtatggagtttggtctaactcactcatactgggtaccattacatcaagaatagattg 698

                                                                       
Query: 188 ttttgaaggagttatattctacatgttttcagtgatattgcattatgactcttacatctt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttttgaaggagttatattctacatgttttcagtgatattgcattatgactcttacatctt 638

                                                                       
Query: 248 gtattatttctttgcttaagttgattttatcagtgatattattttagttggagaatttgc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gtattatttctttgcttaagttgattttatcagtgatattattttagttggagaatttgc 578

                                                                       
Query: 308 agtgtagaagtggaatgtagatgtgataaagttgatgagtatagctcagaaaatactttc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agtgtagaagtggaatgtagatgtgataaagttgatgagtatagctcagaaaatactttc 518

                                                                       
Query: 368 tcaactaggagctcagggtgtatgttacaactctacattattccctggtatatattaata 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcaactaggagctcagggtgtatgttacaactctacattattccctggtatatattaata 458

                                                                       
Query: 428 gcaacaacaaccacagttgtggatatccccattattagatagctgtaccagccaatgaaa 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gcaacaacaaccacagttgtggatatccccattattagatagctgtaccagccaatgaaa 398

                                                                       
Query: 488 aacagtgagaactatgacttcaacaaccgttgaaaagtaaaacagacagacaaagcacgg 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aacagtgagaactatgacttcaacaaccgttgaaaagtaaaacagacagacaaagcacgg 338

                                                                       
Query: 548 taggaaggagcagattcagatttgatttactatgtttaaggatgggagtaaaattgggtg 607
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 337 taggaaggagcagattcagatttgatttactatgtttagggatgggagtaaaattgggtg 278

                                                                       
Query: 608 ggagaggctaattataaacattataacaacttctaaaataaaaatatgagattgaaaaat 667
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 ggagaggctaattataaacattataacaacttcaaaaataaaaatatgagattgaaaaat 218

                     
Query: 668 ttgcttggaa 677
           ||||||||||
Sbjct: 217 ttgcttggaa 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)